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Allen Institute for Cell Science

BrainGlobe

Cell Segmentation Course

Dresden

KapoorLabs

Segmentation Plugins by the Alfa Cohort

3

3D cell centroid annotator

napari 3D filament annotator

napari-3d-ortho-viewer

A

napari-accelerated-pixel-and-object-classification

affinder

napari Affinities

napari-aicsimageio

napari AIDeveloper

napari-allencell-annotator

allencell-ml-segmenter

napari-allencell-segmenter

Amend segmentation and track

anchor-droplet-chip

napari-animated-gif-io

napari-animation

napari-annotate

Annotation Toolbox

napari-annotator

napari-annotatorj

Apple

napari-apr-viewer

napari-arboretum

napari ARCOS

napari-assistant

napari-assistant-plugin-generator

napari avidaq

B

BacSeg

bbii-decon

beetlesafari

bfio

napari-bigfish

napari-bigwarp

napari-bil-data-viewer

napari bio sample data

napari-bioformats

BioImage.IO Model Manager

Bleaching Correction

napari-blender-bridge

blik

napari blob detection

Blossom

Boids

Bounding Box

napari-boxmanager

Napari Brainbow Diagnose

brainglobe-napari-io

brainreg-napari

brainreg-segment

napari-brainways

napari-brightness-contrast

napari-brushsettings

btrack

napari-bud-cell-segmenter

napari BudAnnotation

C

napari Calibration

napari-ccp4map

Cell Segmentation Annotator

cellfinder-napari

cellpose-napari

chatgpt

napari-checkerboard

napari-clemreg

napari-clusters-plotter

napari-compressed-labels-io

Conidie

napari-console

Cookiecut

Napari Correct Drift

napari-crop

napari-cryofibsem-monitor

napari-cupy-image-processing

napari-curtain

CZANN Segmentation

napari-czifile2

D

napari-data-preview

Napari DeepFinder

napari DeepLabCut

napari DeepMeta

napari-DeepSpot

DenoiSeg

devbio-napari

DEXP

Disease classifier

napari-dv

napari-dvid

napari-dzi-zarr

E

napari-ehooke

elastix-napari

napari-elementary-numpy-operations

napari-em-reader

empanada-napari

EpiTools

Napari Error Reporter

F

faser

napari feature classifier

napari-features

napari-features-selector

napari-figure

napari filaments

napari-file-watcher

napari-folder-browser

G

GEMspa

napari generic SIMulator

napari-geojson

napari-geoscience-viewer

grabber-ift

napari-griottes

napari Gruvbox

Guanine Crystal Analysis

H

napari-hdf5-labels-io

napari-hello

napari Help

Hesperos application

napari-hierarchical

Hough circle detector

I

iacs-ipac-reader

napari IDS

ilastik-napari

Image Processing Workflow

Image-Composer

Image-Part-Selecter

napari-image-stacker

napari-imagej

napari-imaris-loader

IMAXT Multiscale Image Napari Plugin

napari-imc

napari-imsmicrolink

In Silico Fate Mapping

indices

Infer sub-Cellular Object Npe2 plugin

Input Visualizer

Napari-ISM

napari-itk-io

J

napari-J

K

napari-kics

Koopa

L

napari label interpolator

Label-Creator

napari-labelimg4classification

napari Labeling

napari-labelling-assistant

napari labels overlap

napari-laptrack

napari-large-image-importer

Lattice Lightsheet Analysis

Layer Table

Layer-Data-Replace

napari-layer-details-display

napari-lazy-openslide

napari LF

Napari Listener

Napari Live Flim

napari-live-recording

napari-locpix

M

napari macro-kit

Manual Transforms

napari mat file reader

napari-mat-images

napari math

napari Matplotlib

napari-medical-image-formats

Merge StarDist Masks

meshio

napari METROID

napari-micromanager

napari-microscope

mikro-napari

misic-napari

napari-mm3

napari molecule reader

morphometrics

morphometrics engine

morphospace

napari-mouse-controls

napari-mrcfile-handler

napari-mrcfile-reader

napari-mri

napari-multitask

Napari Mzarr

N

napari n2v

Napari Napari

napari_video

NASA sample images

natari

napari-nd-cropper

napari nd2 folder viewer

napari-ndtiffs

neuralDev

nfinder

Napari NiBabel

napari-nifti

napari-nikon-nd2

napari NLM

Napari nucleAIzer plugin

napari-nyxus

O

obj file reader

Offset-Subtraction

napari okapi-em

napari OMAAS

napari-ome-zarr

napari-omero

napari-organoid-counter

napari-owncloud

P

Palmari

Partial-Aligner

PartSeg

PartSeg-smfish

napari patch creator

napari-pdf-reader

PDS reader plugin for Napari

napari-PHILOW

napari-PICASSO

Pixel correction

platelet-unet-watershed

PlatyMatch

napari-plot

napari-plot-profile

napari-plugin-search

Power Spectrum

napari-power-widgets

napari PRAM

napari-process-points-and-surfaces

Projection of Points layers

napari proofread brainbow

napari-properties-plotter

napari-properties-viewer

PSF simulator

napari-psf-analysis

psfmodels

napari PSSR

napari-pyclesperanto-assistant

pyCUDAdecon

napari pymeshlab

napari pystackreg

Q

QR-Code

napari Quoll

R

recOrder-napari

RedLionfish

Result stack

Rioxarray Plugin

napari-roi

Roi Registration

S

napari sairyscan

napari-sam

napari-SAM4IS

sc3D Viewer

napari-script-editor

napari sdeconv

napari-seedseg

napari-segment

Segment Anything

napari-segment-blobs-and-things-with-membranes

serialcellpose

napari sif file reader

SIFTReg

napari SIM processor

napari-simpleitk-image-processing

skan

skeleton-finder

napari-skimage-regionprops

smo

Snouty Viewer

napari-solarized

napari-spacetx-explorer

napari-spatial-omics

napari spatialdata

SplineDist

Napari SplineIt2

Spreadsheet

Stable Diffusion

stardist-napari

napari Steinpose

napari-stl-exporter

napari-stracking

napari-stress

napari-subboxer

napari-svetlana

napari SVG

T

napari-tabu

napari-text-layer

the-segmentation-game

napari TileDB bioimaging

napari-tiler

napari-time-series-plotter

napari-time-slicer

napari-timeseries-opener-plugin

Napari TissUUmaps

Tomocube data viewer

ToMoDL Reconstruction

napari-tomoslice

napari-tomotwin

Napari Tracer Plugin

napari-tracks-reader

napari TRAIT2D

Turing Patterns

napari tyssue

U

Napari UI tracer

UMAP

unicell

V

napari validate random label predictions

Vesicles Segmentation

vessel-express-napari

napari VideoCVDask

VoDEx

VollSeg Napari MTrack Plugin

vollseg-napari

vollseg-napari-trackmate

W

waver

napari-workflow-inspector

napari-workflow-optimizer

workshop demo

World2Data

WSI Reader

napari-wsireg

Y

napari-yapic-prediction

napari-yolov5

yt-napari

Z

zarpaint

zarr-tools

napari-zelda

napari-zulip