The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

seu-3d

seu-3d

3d spatial visualization napari plugin

    description

    3d visualization and analysis plugin for spatial transcription embryo base on napari

    updata log

    [1.1.7] fix bug of one gene adjust contrast darker,expand adjust contrast function to 1/2/3gene analyse

    [1.1.6] Expand select XY to select XYZ

    [1.1.5] 1.Fixed the bug where visible cells decreased with the number of operations 2.When creating a flatten layer, the visibility inherits from the original visibility 3.Unify the length of the mask variable when calculating and plotting 4.The original situation where the threshold constraints of each gene were mutually inherited has been changed. Now, they are all inherited from tissue_filter

    [1.1.4] 1.Fixed the bug related to multi-gene screening 2.The calculation and plotting of moran's I have been optimized

    [1.1.3] fix buges

    [1.1.2] enrich function

    [1.1.1] change color_map

    [1.1.0] rebuild whole package

    acknowledge

    https://github.com/GuignardLab/sc3D https://github.com/GuignardLab/napari-sc3D-viewer

    environment

    Version:

    • 1.1.7

    Last updated:

    • 14 July 2025

    First released:

    • 26 May 2025

    License:

    • Information not submitted

    Supported data:

    • Information not submitted

    Plugin type:

    GitHub activity:

    • Stars: 1
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    Operating system:

    Requirements:

    • Information not submitted