Plugins

Browse plugins: 414

yt-napari

yt-napari

A napari plugin for loading data from yt

  • Chris Havlin
  • First released:

    02 May 2022
  • Last updated:

    23 May 2024
  • Installs:

    176
  • Plugin type:

    Reader, Widget

Motile

motile-plugin

Tracking with motile

  • Caroline Malin-Mayor
  • First released:

    23 May 2024
  • Last updated:

    23 May 2024
  • Installs:

    8
  • Plugin type:

    Sample data, Widget

AlveolEye

AlveolEye

Reads lung slides with AI-driven and classical methods

  • Joseph Hirsh
  • First released:

    22 May 2024
  • Last updated:

    22 May 2024
  • Installs:

    11
  • Plugin type:

    Reader, Sample data, Widget, Writer

Cut Detector

cut-detector

Automatic Cut Detector

  • Thomas Bonte
  • First released:

    17 October 2023
  • Last updated:

    22 May 2024
  • Installs:

    244
  • Plugin type:

    Widget

CryoET Data Portal

napari-cryoet-data-portal

List, preview, and open data from the CZII CryoET Data Portal

  • Andy Sweet
  • First released:

    14 August 2023
  • Last updated:

    21 May 2024
  • Installs:

    253
  • Plugin type:

    Reader, Sample data, Widget

PixSeq

napari-PixSeq

A Napari plugin for extracting time series traces from Single Molecule Localisation Microsocpy (SMLM) data.

  • Piers Turner
  • First released:

    29 February 2024
  • Last updated:

    21 May 2024
  • Installs:

    35
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

ToMoDL Reconstruction

napari-tomodl

A plugin for optical projection tomography reconstruction with model-based neural networks.

  • Marcos Antonio Obando
  • Germán Mato
  • Teresa Correia
  • First released:

    15 March 2023
  • Last updated:

    20 May 2024
  • Installs:

    381
  • Plugin type:

    Widget

Nellie

nellie

Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

  • Austin E. Y. T. Lefebvre
  • First released:

    21 March 2024
  • Last updated:

    20 May 2024
  • Installs:

    220
  • Plugin type:

    Widget

napari-PHILOW

napari-PHILOW

PHILOW is an interactive deep learning-based platform for 3D datasets

  • Hiroki Kawai
  • First released:

    02 May 2022
  • Last updated:

    20 May 2024
  • Installs:

    297
  • Plugin type:

    Widget

napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    16 January 2021
  • Last updated:

    17 May 2024
  • Installs:

    5.3K
  • Plugin type:

    information not submitted

Napari Segment Everything

napari-segment-everything

A Napari SAM plugin to segment everything in your image (not just some things)

  • Brian Northan
  • Ian Coccimiglio
  • First released:

    01 April 2024
  • Last updated:

    17 May 2024
  • Installs:

    163
  • Plugin type:

    Widget

autolamella

autolamella

Automatated ion beam milling for cryo-electron microscopy sample preparation.

  • Genevieve Buckley
  • First released:

    04 August 2023
  • Last updated:

    17 May 2024
  • Installs:

    403
  • Plugin type:

    information not submitted

fibsem

fibsem

a universal api for fibsem control

  • Patrick Cleeve
  • First released:

    12 July 2023
  • Last updated:

    17 May 2024
  • Installs:

    492
  • Plugin type:

    information not submitted

napari-chatgpt | Omega

napari-chatgpt

A napari plugin to process and analyse images with chatGPT.

  • Loic A. Royer
  • contributors
  • First released:

    03 May 2023
  • Last updated:

    15 May 2024
  • Installs:

    1.3K
  • Plugin type:

    Widget

cellfinder

cellfinder

Automated 3D cell detection in large microscopy images

  • Adam Tyson
  • Christian Niedworok
  • Charly Rousseau
  • BrainGlobe Developers
  • First released:

    17 January 2020
  • Last updated:

    15 May 2024
  • Installs:

    7.1K
  • Plugin type:

    Sample data, Widget

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