Discover, install, and share napari plugins

  • Discover plugins that solve your image analysis challenges
  • Learn how to install into napari
  • Share your image analysis tools with napari’s growing community
  • Share your image analysis tools with napari’s growing community

Browse plugins: 58

brainreg-napari

Multi-atlas whole-brain microscopy registration

  • Stephen Lenzi, Adam Tyson
  • version:
    0.0.3rc0
  • release date:
    02 August 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    Windows 10, Linux

napari-skimage-regionprops

A regionprops table widget plugin for napari

  • Robert Haase
  • version:
    0.1.6
  • release date:
    01 August 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

napari-oclrfc

Pixel and label classification using OpenCL-based Random Forest Classifiers

  • Robert Haase
  • version:
    0.4.3
  • release date:
    01 August 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-manual-split-and-merge-labels

Split and merge labels in napari manually

  • Robert Haase
  • version:
    0.1.2
  • release date:
    01 August 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-pyclesperanto-assistant

GPU-accelerated image processing in napari using OpenCL

  • Robert Haase, Talley Lambert
  • version:
    0.9.10
  • release date:
    01 August 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

waver

Wave simulations

  • Nicholas Sofroniew
  • version:
    0.0.1
  • release date:
    26 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-aicsimageio

AICSImageIO for napari. Multiple file format reading directly into napari using pure Python.

  • Jackson Maxfield Brown
  • version:
    0.3.5
  • release date:
    16 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.8
  • operating system:
    All

napari-hdf5-labels-io

Napari plugin to store set of layers in a .h5 file. Label layer are stored in a sparse representation

  • Duway Nicolas Lesmes Leon
  • version:
    0.2.dev28
  • release date:
    13 July 2021
  • license:
    GPL-3.0
  • Python version:
    <3.9
  • operating system:
    All

napari-deepmeta

Segment mouse lungs and metastasis on MRI images.

  • Edgar Lefevre
  • version:
    1.0
  • release date:
    12 July 2021
  • license:
    MIT
  • Python version:
    >=3.6
  • operating system:
    All

napari-bioformats

Bioformats for napari, using pims

  • Talley Lambert
  • version:
    0.1.2
  • release date:
    10 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-allencell-segmenter

A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science

  • Allen Institute for Cell Science
  • version:
    1.0.3
  • release date:
    09 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-properties-plotter

A napari plugin that automatically generates interactive plots based on layer properties.

  • Lorenzo Gaifas
  • version:
    0.2.1
  • release date:
    08 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-yapic-prediction

Napari widget plugin to perform yapic model segmentation prediction in the napari window

  • Duway Nicolas Lesmes Leon
  • version:
    0.1.dev99
  • release date:
    05 July 2021
  • license:
    GPL-3.0
  • Python version:
    >=3.6
  • operating system:
    All

napari-czifile2

Carl Zeiss Image (.czi) file support for napari

  • Jonas Windhager
  • version:
    0.2.4
  • release date:
    05 July 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

elastix-napari

A toolbox for rigid and nonrigid registration of images.

  • Viktor van der Valk
  • version:
    0.1.7
  • release date:
    05 July 2021
  • license:
    Apache-2.0
  • Python version:
    >=3.6
  • operating system:
    All

napari-dexp

A simple plugin to use with napari

  • Jordao Bragantini
  • version:
    0.0.1.dev1
  • release date:
    01 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

platelet-unet-watershed

Segment platelets with pretrained unet and affinity watershed

  • Juan Nunez-Iglesias & Abigail McGovern
  • version:
    0.0.1
  • release date:
    01 July 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-properties-viewer

A viewer for napari layer properties

  • Kevin Yamauchi
  • version:
    0.0.2
  • release date:
    30 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

napari-mat-images

A plugin to load images stored in MATLAB .mat files with napari

  • Hector Munoz
  • version:
    0.1.3
  • release date:
    30 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

brainglobe-napari-io

Read and write files from the BrainGlobe neuroanatomy suite

  • Adam Tyson
  • version:
    0.1.3
  • release date:
    29 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

cellfinder-napari

Efficient cell detection in large images

  • Adam Tyson
  • version:
    0.0.18
  • release date:
    29 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

brainreg-segment

Manual segmentation of 3D brain structures in a common anatomical space

  • Adam Tyson, Horst Obenhaus
  • version:
    0.2.12
  • release date:
    29 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    Windows 10, Linux

stardist-napari

Object Detection with Star-convex Shapes

  • Uwe Schmidt, Martin Weigert
  • version:
    2021.6.28
  • release date:
    28 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

PartSeg

PartSeg is python GUI for bio imaging analysis especially nucleus analysis,

  • Grzegorz Bokota
  • version:
    0.13.6
  • release date:
    25 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-imc

Imaging Mass Cytometry (IMC) file type support for napari

  • Jonas Windhager
  • version:
    0.5.4
  • release date:
    25 June 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

napari-omero

napari/OMERO interoperability

  • The Open Microscopy and napari teams
  • version:
    0.1.1
  • release date:
    24 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    <=3.10,>=3.7
  • operating system:
    All

napari-ndtiffs

napari plugin for nd tiff folders with OpenCl deskew

  • Talley Lambert
  • version:
    0.1.2
  • release date:
    24 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-dv

Deltavision/MRC file reader for napari

  • Talley Lambert
  • version:
    0.2.6
  • release date:
    24 June 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

bfio

Simple reading and writing classes for tiled tiffs using Bioformats.

  • Nick Schaub
  • version:
    2.1.9
  • release date:
    23 June 2021
  • license:
    MIT
  • Python version:
    >=3.6
  • operating system:
    All

napari-features

extracts image and object features

  • Allen Goodman
  • version:
    0.1.1
  • release date:
    17 June 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

zarpaint

Paint segmentations directly to on-disk/remote zarr arrays

  • Abigail McGovern and Juan Nunez-Iglesias
  • version:
    0.1.0
  • release date:
    17 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-arboretum

Track graph and lineage tree visualization with napari

  • Alan R. Lowe
  • version:
    0.0.2
  • release date:
    14 June 2021
  • license:
    MIT
  • Python version:
    >=3.6
  • operating system:
    All

napari-ome-zarr

A reader for zarr backed OME-NGFF images.

  • OME Team
  • version:
    0.1.1
  • release date:
    14 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-dvid

DVID loader for napari, from a url

  • Emma Zhou
  • version:
    0.2.0
  • release date:
    09 June 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

PlatyMatch

PlatyMatch allows registration of volumetric images of embryos by establishing correspondences between cells

  • Manan Lalit
  • version:
    0.0.3
  • release date:
    08 June 2021
  • license:
    BSD-3
  • Python version:
    >=3.6
  • operating system:
    All

devbio-napari

A collection of napari plugins useful for studying developmental biology

  • Robert Haase
  • version:
    0.1.0
  • release date:
    08 June 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-clemreg

A plugin for registering multimodal image volumes based on common segmented structures of interest with point-clouds.

  • Daniel Krentzel
  • version:
    0.0.1a2
  • release date:
    01 June 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

napari-checkerboard

Compare two images with the itk checkerboard filter

  • Viktor van der Valk
  • version:
    0.0.3
  • release date:
    31 May 2021
  • license:
    Apache-2.0
  • Python version:
    >=3.6
  • operating system:
    All

napari-autolign

A plugin for registering multimodal image volumes based on common segmented structures of interest with point-clouds.

  • Daniel Krentzel
  • version:
    0.0.1a1
  • release date:
    27 May 2021
  • license:
    MIT
  • Python version:
    >=3.7
  • operating system:
    All

napari-tracks-reader

Read tracks from txt (xml, csv) files to napari

  • Sylvain Prigent
  • version:
    0.1.3
  • release date:
    26 May 2021
  • license:
    GPL-3.0
  • Python version:
    >=3.6
  • operating system:
    All

napari_video

napari plugin for reading videos.

  • Jan Clemens
  • version:
    0.2.7
  • release date:
    26 May 2021
  • license:
    MIT
  • Python version:
    >=3.6
  • operating system:
    information not submitted

napari-animation

A plugin for making animations in napari

  • Nicholas Sofroniew, Alister Burt, Guillaume Witz, Faris Abouakil, Talley Lambert
  • version:
    0.0.2
  • release date:
    13 May 2021
  • license:
    BSD 3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-webcam

Use your webcam from napari

  • Robert Haase
  • version:
    0.1.12
  • release date:
    07 May 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

cellpose-napari

a generalist algorithm for anatomical segmentation

  • Carsen Stringer
  • version:
    0.1.3
  • release date:
    03 May 2021
  • license:
    BSD-3
  • Python version:
    >=3.6
  • operating system:
    All

napari-svg

A plugin for reading and writing svg files with napari

  • Nicholas Sofroniew
  • version:
    0.1.5
  • release date:
    01 May 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-itk-io

File IO with itk for napari

  • Matt McCormick
  • version:
    0.1.0
  • release date:
    29 April 2021
  • license:
    Apache-2.0
  • Python version:
    >=3.6
  • operating system:
    All

napari-medical-image-formats

A Plugin in order to read medical image formats such as DICOM and NIfTI

  • Marc Boucsein, Marc Buckmakowski
  • version:
    0.3.6
  • release date:
    24 April 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

misic-napari-plugin

segmentation of bacteria

  • lcb-iam-pswap-le
  • version:
    0.1.1
  • release date:
    09 April 2021
  • license:
    MIT
  • Python version:
    >=3.6
  • operating system:
    All

napari-dzi-zarr

An experimental plugin for viewing Deep Zoom Images (DZI) with napari and zarr.

  • Trevor Manz
  • version:
    0.1.2
  • release date:
    06 April 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

affinder

Quickly find the affine matrix mapping one image to another using manual correspondence points annotation

  • Juan Nunez-Iglesias
  • version:
    0.2.0
  • release date:
    25 March 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

napari-mri

A simple plugin to use with napari for 3D-viewing of Magnetic Resonance Imaging file formats

  • SUSMITA SAHA
  • version:
    0.1.0
  • release date:
    21 March 2021
  • license:
    information not submitted
  • Python version:
    >=3.7
  • operating system:
    All

napari-compressed-labels-io

Plugin exploring different options for reading and writing compressed and portable labels layers in napari.

  • Draga Doncila
  • version:
    0.0.2
  • release date:
    03 March 2021
  • license:
    MIT
  • Python version:
    >=3.6
  • operating system:
    All

napari-em-reader

A napari plugin to read .em files

  • Lorenzo Gaifas
  • version:
    0.1.0
  • release date:
    23 February 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

napari-console

A plugin that adds a console to napari

  • Nicholas Sofroniew
  • version:
    0.0.3
  • release date:
    14 February 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.7
  • operating system:
    All

nd2-dask

Plugin to load nd2 data into napari

  • Draga Doncila Pop
  • version:
    0.0.5
  • release date:
    04 February 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

napari-nikon-nd2

Opens Nikon ND2 files into napari.

  • Chris Wood
  • version:
    0.1.3
  • release date:
    03 February 2021
  • license:
    Apache-2.0
  • Python version:
    >=3.6
  • operating system:
    All

napari-lazy-openslide

A plugin to lazily load multiscale whole-slide images with openslide and dask.

  • Trevor Manz
  • version:
    0.2.0
  • release date:
    30 January 2021
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

napari-btrack-reader

A plugin to load btrack files

  • Alan R. Lowe
  • version:
    0.1.0
  • release date:
    05 November 2020
  • license:
    BSD-3-Clause
  • Python version:
    >=3.6
  • operating system:
    All

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