Plugins

Browse plugins: 456

NaPaM

napam

A plugin that allows you to run macros (i.e. python scripts) on the images for any kind of image processing.

  • Jaison John
  • First released:

    26 April 2024
  • Last updated:

    09 October 2024
  • Installs:

    125
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

napari-simple-orthoviewer

napari-simple-orthoviewer

A simple orthogonal viewer in napari

  • Krishnan Venkataraman
  • First released:

    08 October 2024
  • Last updated:

    08 October 2024
  • Installs:

    0
  • Plugin type:

    information not submitted

Segment Anything V2

napari-SAMV2

Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.

  • Krishnan Venkataraman
  • First released:

    08 October 2024
  • Last updated:

    08 October 2024
  • Installs:

    0
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

Grid cropping napari plugin

napari-grid-cropping

Create multiple crops of an image in a grid like fashion.

  • Niklas Breitenbach-Netter
  • First released:

    08 October 2024
  • Last updated:

    08 October 2024
  • Installs:

    0
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

cellfinder

cellfinder

Automated 3D cell detection in large microscopy images

  • Adam Tyson
  • Christian Niedworok
  • Charly Rousseau
  • BrainGlobe Developers
  • First released:

    17 January 2020
  • Last updated:

    08 October 2024
  • Installs:

    9K
  • Plugin type:

    Sample data, Widget

napari-spotiflow

napari-spotiflow

Napari plugin for Spotiflow

  • Albert Dominguez Mantes
  • Martin Weigert
  • First released:

    02 February 2024
  • Last updated:

    07 October 2024
  • Installs:

    240
  • Plugin type:

    Reader, Sample data, Widget

napari Matplotlib

napari-matplotlib

A plugin to use Matplotlib with napari

  • David Stansby
  • First released:

    02 May 2022
  • Last updated:

    07 October 2024
  • Installs:

    23K
  • Plugin type:

    Widget

eHooke

napari-ehooke

eHooke implementation within napari

  • António Brito
  • First released:

    02 March 2023
  • Last updated:

    07 October 2024
  • Installs:

    241
  • Plugin type:

    Sample data, Widget

napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    16 January 2021
  • Last updated:

    06 October 2024
  • Installs:

    6.2K
  • Plugin type:

    information not submitted

napari-pyav

napari-pyav

Napari plugin for reading videos using PyAV

  • jlab.berlin
  • First released:

    05 October 2024
  • Last updated:

    05 October 2024
  • Installs:

    11
  • Plugin type:

    information not submitted

napari-bbox-spfluo

napari-bbox-spfluo

A new layer for bounding boxes in 2+ dimensions. Fork of napari-bbox for spfluo-app needs.

    • First released:

      04 October 2024
    • Last updated:

      04 October 2024
    • Installs:

      60
    • Plugin type:

      information not submitted

    splinebox

    napari-splinebox

    A plugin to create splines with napari.

    • Florian Aymanns
    • First released:

      01 October 2024
    • Last updated:

      04 October 2024
    • Installs:

      13
    • Plugin type:

      Widget
    Workflow step:
    Image annotation
    Image segmentation

    Nellie

    nellie

    Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

    • Austin E. Y. T. Lefebvre
    • First released:

      21 March 2024
    • Last updated:

      03 October 2024
    • Installs:

      580
    • Plugin type:

      Widget

    napari_psf_analysis

    napari-psf-analysis

    A plugin to analyse point spread functions (PSFs).

    • Tim-Oliver Buchholz
    • First released:

      30 March 2022
    • Last updated:

      02 October 2024
    • Installs:

      731
    • Plugin type:

      Widget

    TomoTwin

    napari-tomotwin

    Several tools for the work with TomoTwin

    • Thorsten Wagner
    • First released:

      24 March 2023
    • Last updated:

      02 October 2024
    • Installs:

      1.6K
    • Plugin type:

      Widget