Yolo5 Mitosis Detector

napari-yolo5-mitosis-detector

A simple plugin to use yolo5 for mitosis detection with napari

Workflow step:
Image annotation

License BSD-3 PyPI Python Version tests codecov napari hub

A simple plugin to use yolo5 for mitosis detection with napari

tpoquillon@gmail.com


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-yolo5-mitosis-detector via pip:

pip install napari-yolo5-mitosis-detector

To install latest development version :

pip install git+https://github.com/TPoquillon/napari-yolo5-mitosis-detector.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-yolo5-mitosis-detector" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.1

Last updated:

  • 15 December 2023

First released:

  • 15 December 2023

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 1

Python versions supported:

Operating system:

Requirements:

  • numpy ==1.26.2
  • magicgui ==0.8.0
  • qtpy ==2.4.1
  • scikit-image ==0.20.0
  • opencv-python ==4.8.1.78
  • torch ==2.1.1
  • ultralytics ==8.0.222
  • shapely ==2.0.2
  • importlib-resources ==6.1.1
  • pandas ==2.1.3
  • napari-aicsimageio ==0.7.2

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