Version:

  • 0.1.2

Release date:

  • 10 May 2022

First released:

  • 06 May 2022

License:

  • "CeCILL"

Supported data:

  • Information not submitted

GitHub activity:

  • Stars: 2
  • Forks: 0
  • Issues + PRs: 0

GitHub activity:

  • Stars: 2
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

  • >=3.8

Operating system:

  • OS Independent

Requirements:

  • numpy
  • napari
  • magicgui
  • qtpy
  • PyQt5
  • sklearn
  • dask (==2022.1.0)
  • dask-image (==2021.12.0)
  • tiffile
  • matplotlib (>=3.5)
  • scikit-image (>=0.18.3)
  • trackpy (==0.5.0)
  • pandas

palmari

A pipeline for PALM movies analysis (pre-processing, localization, drifft correction, tracking)


    Authors:

    • Hippolyte Verdier

    Source code:

    Authors:

    • Hippolyte Verdier

    Source code:

    Documentation Status Python Version tests napari hub License

    A processing pipeline for PALM movies analysis (pre-processing, localization, drift correction, tracking).

    Check out the documentation to get started.

    napari_plugin


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Installation

    You can install palmari via pip:

    pip install palmari

    To install latest development version :

    pip install git+https://github.com/hippover/palmari.git

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the CeCILL license.

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.1.2

    Release date:

    • 10 May 2022

    First released:

    • 06 May 2022

    License:

    • "CeCILL"

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 2
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    • >=3.8

    Operating system:

    • OS Independent

    Requirements:

    • numpy
    • napari
    • magicgui
    • qtpy
    • PyQt5
    • sklearn
    • dask (==2022.1.0)
    • dask-image (==2021.12.0)
    • tiffile
    • matplotlib (>=3.5)
    • scikit-image (>=0.18.3)
    • trackpy (==0.5.0)
    • pandas

    Version:

    • 0.1.2

    Release date:

    • 10 May 2022

    First released:

    • 06 May 2022

    License:

    • "CeCILL"

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 2
    • Forks: 0
    • Issues + PRs: 0

    GitHub activity:

    • Stars: 2
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    • >=3.8

    Operating system:

    • OS Independent

    Requirements:

    • numpy
    • napari
    • magicgui
    • qtpy
    • PyQt5
    • sklearn
    • dask (==2022.1.0)
    • dask-image (==2021.12.0)
    • tiffile
    • matplotlib (>=3.5)
    • scikit-image (>=0.18.3)
    • trackpy (==0.5.0)
    • pandas

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