napari-itk-io

File IO with itk for napari.

Image metadata, e.g. the pixel spacing, origin, and metadata tags, are preserved and passed into napari.

Supported image file formats:

• BioRad
• BMP
• DICOM
• DICOM Series
• ITK HDF5
• JPEG
• GE4,GE5,GEAdw
• Gipl (Guys Image Processing Lab)
• LSM
• MetaImage
• MINC 2.0
• MGH
• MRC
• NifTi
• NRRD
• Portable Network Graphics (PNG)
• Tagged Image File Format (TIFF)
• VTK legacy file format for images

For DICOM Series, select the folder containing the series with File -> Open Folder.... The first series will be selected and sorted spatially.

Installation¶

You can install napari-itk-io via pip:

pip install napari-itk-io

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

Follow the itk contributing guidelines and the itk code of conduct.

License¶

Distributed under the terms of the Apache Software License 2.0 license, "napari-itk-io" is free and open source software.

Issues¶

If you encounter any problems, please file an issue along with a detailed description.