napari-itk-io

napari-itk-io

File IO with itk for napari

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File IO with itk for napari.

Image metadata, e.g. the pixel spacing, origin, and metadata tags, are preserved and passed into napari.

Supported image file formats:

For DICOM Series, select the folder containing the series with File -> Open Folder.... The first series will be selected and sorted spatially.

Installation

You can install napari-itk-io via pip:

pip install napari-itk-io

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

Follow the itk contributing guidelines and the itk code of conduct.

License

Distributed under the terms of the Apache Software License 2.0 license, "napari-itk-io" is free and open source software.

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.3.0

Last updated:

  • 15 May 2023

First released:

  • 28 April 2021

License:

Supported data:

  • Information not submitted

Open extension:

Save extension:

Save layers:

GitHub activity:

  • Stars: 7
  • Forks: 2
  • Issues + PRs: 3

Python versions supported:

Operating system:

Requirements:

  • numpy
  • napari-plugin-engine (>=0.2.0)
  • itk-io (>=5.2.0)
  • itk-napari-conversion