Marcos Antonio Obando

# napari-tomodl

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A plugin for optical projection tomography reconstruction with model-based neural networks.

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This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.



## Installation

This package requires [torch-radon] for optimized GPU tomographic reconstruction:

    pip install 'torch-radon @ https://rosh-public.s3-eu-west-1.amazonaws.com/radon-v2/cuda-11.1/torch-1.8/torch_radon-2.0.0-cp38-cp38-linux_x86_64.whl'

and `PyTorch == 1.8.0` via wheel, whica can be downloaded and installed with: 

    pip install 'torch @ https://download.pytorch.org/whl/cu111/torch-1.8.0%%2Bcu111-cp38-cp38-linux_x86_64.whl'

You can install `napari-tomodl` via [pip]:

    pip install napari-tomodl




## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [MIT] license,
"napari-tomodl" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[napari]: https://github.com/napari/napari
[torch-radon]: https://github.com/matteo-ronchetti/torch-radon
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/

napari-tomodl






A plugin for optical projection tomography reconstruction with model-based neural networks.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation
This package requires torch-radon for optimized GPU tomographic reconstruction:
pip install 'torch-radon @ https://rosh-public.s3-eu-west-1.amazonaws.com/radon-v2/cuda-11.1/torch-1.8/torch_radon-2.0.0-cp38-cp38-linux_x86_64.whl'

and PyTorch == 1.8.0 via wheel, whica can be downloaded and installed with: 
pip install 'torch @ https://download.pytorch.org/whl/cu111/torch-1.8.0%%2Bcu111-cp38-cp38-linux_x86_64.whl'

You can install napari-tomodl via pip:
pip install napari-tomodl

Contributing
Contributions are very welcome. Tests can be run with tox, please ensure
the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license,
"napari-tomodl" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.

napari-tomodl

A plugin for optical projection tomography reconstruction with model-based neural networks.

ToMoDL Reconstruction

A plugin for optical projection tomography reconstruction with model-based neural networks.

Installation¶

Contributing¶

License¶

Issues¶

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