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brainrender

brainrender-napari

A napari plugin to render BrainGlobe atlases and associated data as layers.

License BSD-3 PyPI Python Version tests codecov napari hub

Visualisation and management of BrainGlobe atlases in napari.


A napari plugin to visualise and manage BrainGlobe atlases. brainrender-napari aims to port the functionality of brainrender to napari. add-region-brainrender-napari

Usage

Check out the "Visualising an atlas in napari" tutorial in the BrainGlobe documentation.

Installation

We strongly recommend to use a virtual environment manager (like conda or venv). The installation instructions below will not specify the Qt backend for napari, and you will therefore need to install that separately. Please see the napari installation instructions for further advice on this.

You can install brainrender-napari via pip:

pip install brainrender-napari

To install latest development version :

pip install git+https://github.com/brainglobe/brainrender-napari.git

Seeking help or contributing

We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.

License

Distributed under the terms of the BSD-3 license, "brainrender-napari" is free and open source software

Acknowledgements

This @napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template and the Neuroinformatics Unit's template.

Version:

  • 0.0.4.post1

Last updated:

  • 02 August 2024

First released:

  • 13 October 2023

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 20
  • Forks: 2
  • Issues + PRs: 38

Python versions supported:

Operating system:

Requirements:

  • brainglobe-atlasapi>=2.0.1
  • brainglobe-utils>=0.4.3
  • meshio
  • napari>=0.4.18
  • numpy
  • qtpy