Motile

motile-plugin

Tracking with motile

    tests codecov napari hub

    The full documentation of the plugin can be found here.

    A plugin for tracking with motile in napari. Motile is a library that makes it easy to solve tracking problems using optimization by framing the task as an Integer Linear Program (ILP). See the motile documentation for more details on the concepts and method.


    Installation

    This plugin depends on motile, which in turn depends on gurobi and ilpy. These dependencies must be installed with conda before installing the plugin with pip.

    conda create -n motile-plugin python=3.10
    conda activate motile-plugin
    conda install -c conda-forge -c funkelab -c gurobi ilpy
    pip install motile-plugin

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 1.1.0

    Last updated:

    • 20 September 2024

    First released:

    • 23 May 2024

    License:

    Supported data:

    • Information not submitted

    Plugin type:

    GitHub activity:

    • Stars: 5
    • Forks: 2
    • Issues + PRs: 19

    Python versions supported:

    Operating system:

    Requirements:

    • napari[all]
    • numpy
    • magicgui
    • qtpy
    • scikit-image
    • motile>=0.3
    • motile-toolbox>=0.3.4
    • pydantic
    • tifffile[all]
    • fonticon-fontawesome6
    • pyqtgraph
    • lxml-html-clean