PoseR

PoseR-napari

A deep learning toolbox for decoding animal behaviour

A deep learning toolbox for decoding animal behaviour


alt text

Load pose data

Extract windows of behaviour

Annotate behaviours and save labels

Train models on annotated data and predict behaviours

Load annotated data and compare predictions vs annotated ground truth

Decode behaviours live frame by frame

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

Version:

  • 0.0.1b3

Last updated:

  • 21 February 2023

First released:

  • 21 February 2023

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 5
  • Forks: 1
  • Issues + PRs: 3

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • napari
  • napari-video
  • napari-plot
  • tables
  • imageio-ffmpeg (==0.4.8)
  • pytorch-lightning
  • test-tube
  • scikit-learn
  • matplotlib
  • numba
  • networkx
  • seaborn

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