The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Ortho Viewer Widget

napari-3d-ortho-viewer

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

License PyPI Python Version tests codecov napari hub

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images


https://github.com/gatoniel/napari-3d-ortho-viewer/assets/40384506/4296dc11-ea37-40a0-8b17-eeb77480672f

This plugin is heavily inspired by ortho-view-napari.

Check out this post on image.sc (https://forum.image.sc/t/napari-visualization-in-3-planes/57768) for more infos about multiview support in napari.

This viewer has some additional features:

  • double click to jump to specific position in all slices
  • additional 3d view of 3d stack with lines or planes indicating current position

Installation

You can install napari-3d-ortho-viewer via pip:

pip install napari-3d-ortho-viewer

To install latest development version :

pip install git+https://github.com/gatoniel/napari-3d-ortho-viewer.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-3d-ortho-viewer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Version:

  • 0.1.5

Last updated:

  • 21 November 2023

First released:

  • 03 December 2021

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 8
  • Forks: 2
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image