MouseCHD

mousechd-napari

A tool for heart segmentation and congenital heart defect detection in mice.

Tool for heart segmentation and congenital heart defect detection in mice.

Installation

From Bundle

(1) Install Napari by following this instruction https://napari.org/stable/tutorials/fundamentals/installation.html#install-as-a-bundled-app

(2) Install mousechd-napari plugin: * Run Napari * Plugins --> Install/Uninstall Plugins ... --> Search for mousechd-napari --> Click on install.

(3) Restart Napari to run the plugin

From code

conda create -n mousechd_napari python=3.9
conda activate mousechd_napari
pip install "napari[all]"
pip install mousechd-napari
napari

How to use

Please find details instruction in folder docs

Version:

  • 0.0.3

Last updated:

  • 19 September 2024

First released:

  • 18 November 2023

License:

Supported data:

  • Information not submitted

Open extension:

GitHub activity:

  • Stars: 1
  • Forks: 0
  • Issues + PRs: 1

Python versions supported:

Operating system:

Requirements:

  • setuptools
  • packaging
  • mousechd