Blossom

napari-blossom

Segmentation of blossom apple tree images

    License BSD-3 PyPI Python Version tests codecov napari hub

    Segmentation of blossom apple tree images


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Installation

    You can install napari-blossom via pip:

    pip install napari-blossom

    To install latest development version :

    pip install git+https://github.com/hereariim/napari-blossom.git

    How does it works

    This module offers a plugin that allows you to segment the images of the apple tree flowers. As input, you can enter a single image with the image selection widget. Once the image is entered in the napari window, you can segment the apple blossoms with the image segmentation widget by running the run button. The segmented image will appear in the napari window.

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-blossom" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.0.3

    Last updated:

    • 08 December 2022

    First released:

    • 20 June 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    Open extension:

    Save extension:

    Save layers:

    GitHub activity:

    • Stars: 2
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • magicgui
    • qtpy
    • opencv-python-headless
    • tensorflow
    • scikit-image
    • napari
    • focal-loss

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