napari-opt-handler

Optical Projection Tomography preprocessing plugin for napari

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This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

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Jump to:

• Usage
  • Starting point
  • Global settings
  • Corrections
  • Other
• Installation
• Troubleshooting installation
• Contributing
• License
• Acknowledgements

🛀 Usage¶

Starting point¶

1. Data streamed from ImSwitch OPT widget (see details here[LINK])
2. Loaded images as data stack
3. Other stack 3D volume data formats

Global settings¶

Tracking

Inplace operations

Corrections¶

Dark-field correction Bright-field correction Bad-pixel correction Intensity correction

Other¶

Binning ROI -Log

💻 Installation¶

You can install napari-opt-handler via pip:

pip install napari-opt-handler

To install latest development version :

pip install git+https://github.com/QBioImaging/napari-opt-handler.git

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

🚓 License¶

Distributed under the terms of the BSD-3 license, "napari-opt-handler" is free and open source software

🔨 Issues¶

If you encounter any problems, please file an issue along with a detailed description.