Optical Projection Tomography preprocessing plugin for napari

    License BSD-3 PyPI Python Version tests codecov napari hub

    Optical Projection Tomography preprocessing plugin for napari

    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    place for the gif

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    🛀 Usage

    Starting point

    1. Data streamed from ImSwitch OPT widget (see details here[LINK])
    2. Loaded images as data stack
    3. Other stack 3D volume data formats

    Global settings


    Inplace operations


    Dark-field correction Bright-field correction Bad-pixel correction Intensity correction


    Binning ROI -Log

    💻 Installation

    You can install napari-opt-handler via pip:

    pip install napari-opt-handler

    To install latest development version :

    pip install git+


    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    🚓 License

    Distributed under the terms of the BSD-3 license, "napari-opt-handler" is free and open source software

    🔨 Issues

    If you encounter any problems, please file an issue along with a detailed description.


    • 0.0.3

    Last updated:

    • 03 July 2024

    First released:

    • 03 July 2024


    Supported data:

    • Information not submitted

    Plugin type:

    • Information not submitted

    GitHub activity:

    • Stars: 1
    • Forks: 0
    • Issues + PRs: 2

    Python versions supported:

    Operating system:


    • numpy
    • magicgui
    • scikit-image
    • matplotlib