napari labels overlap

create an overlap labels layer from two labels layers

Description¶

This plugin takes two labels layers (layerA, layerB) as inputs, and generate the overlapped regions as a binary labels layer. Three modes:
(1) A_OR_B: new layer = layerA OR layerB (union)
(2) A_AND_B: new layer = layerA AND layerB (intersection)
(3) A_OUTSIDE_B: new layer = layerA OUTSIDE layerB (complement)

Applicaions¶

• Object colocalization
• Merge separately identified objects

Future work¶

• Support N labels layers
• Basic coloc stats (% volume overlap)
• Output Labels with distinct IDs and links to original label IDs

Release log¶

• 0.0.2
  -- Run on npe2
  -- Add output types: binary/connected component
  
• 0.0.1
  -- Run on npe1
  

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This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation¶

You can install napari-labels-overlap via pip:

pip install napari-labels-overlap

To install latest development version :

pip install git+https://github.com/chili-chiu/napari-labels-overlap.git

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License¶

Distributed under the terms of the BSD-3 license, "napari-labels-overlap" is free and open source software

Issues¶

If you encounter any problems, please file an issue along with a detailed description.