napari labels overlap
create an overlap labels layer from two labels layers
Source code:
Source code:
create an overlap labels layer from two labels layers
Description¶
This plugin takes two labels layers (layerA, layerB) as inputs, and generate the overlapped regions as a binary labels layer.
Three modes:
(1) A_OR_B: new layer = layerA OR layerB (union)
(2) A_AND_B: new layer = layerA AND layerB (intersection)
(3) A_OUTSIDE_B: new layer = layerA OUTSIDE layerB (complement)
Applicaions¶
- Object colocalization
- Merge separately identified objects
Future work¶
- Support N labels layers
- Basic coloc stats (% volume overlap)
- Output Labels with distinct IDs and links to original label IDs
Release log¶
- 0.0.2
-- Run on npe2
-- Add output types: binary/connected component - 0.0.1
-- Run on npe1
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation¶
You can install napari-labels-overlap
via pip:
pip install napari-labels-overlap
To install latest development version :
pip install git+https://github.com/chili-chiu/napari-labels-overlap.git
Contributing¶
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License¶
Distributed under the terms of the BSD-3 license, "napari-labels-overlap" is free and open source software
Issues¶
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.0.3
Release date:
- 22 June 2022
First released:
- 30 November 2021
License:
- BSD-3-Clause
Supported data:
- Information not submitted
Plugin type:
GitHub activity:
- Stars: 1
- Forks: 0
- Issues + PRs: 0