Version:

  • 0.2.1

Release date:

  • 01 January 2022

First released:

  • 20 August 2021

License:

  • BSD-3-Clause

Supported data:

  • Information not submitted

GitHub activity:

  • Stars: 6
  • Forks: 4
  • Issues + PRs: 10

GitHub activity:

  • Stars: 6
  • Forks: 4
  • Issues + PRs: 10

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • pyqtgraph
  • napari
  • napari-tools-menu
  • napari-skimage-regionprops (>=0.2.4)

napari-plot-profile

Plot intensity along a line in napari


    License PyPI Python Version tests codecov Development Status napari hub

    Plot intensities along a line in napari.

    img.png

    Usage

    • Open some images in napari.

    • Add a shapes layer.

    img.png

    • Activate the line drawing tool or the path tool and draw a line.

    img.png

    • After drawing a line, click on the menu Plugins > Measurements (Plot Profile)
    • If you modify the line, you may want to click the "Refresh" button to redraw the profile.

    img.png

    To see how these steps can be done programmatically from python, check out the demo notebook


    This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

    Installation

    You can install napari-plot-profile via pip:

    pip install napari-plot-profile

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-plot-profile" is free and open source software

    Issues

    If you encounter any problems, please create a thread on image.sc along with a detailed description and tag @haesleinhuepf.

    Version:

    • 0.2.1

    Release date:

    • 01 January 2022

    First released:

    • 20 August 2021

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 6
    • Forks: 4
    • Issues + PRs: 10

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • napari-plugin-engine (>=0.1.4)
    • numpy
    • pyqtgraph
    • napari
    • napari-tools-menu
    • napari-skimage-regionprops (>=0.2.4)

    Version:

    • 0.2.1

    Release date:

    • 01 January 2022

    First released:

    • 20 August 2021

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 6
    • Forks: 4
    • Issues + PRs: 10

    GitHub activity:

    • Stars: 6
    • Forks: 4
    • Issues + PRs: 10

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • napari-plugin-engine (>=0.1.4)
    • numpy
    • pyqtgraph
    • napari
    • napari-tools-menu
    • napari-skimage-regionprops (>=0.2.4)

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