napari Matplotlib

A plugin to create Matplotlib plots from napari layers

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Introduction¶

napari-matplotlib is a bridge between napari and matplotlib, making it easy to create publication quality Matplotlib plots based on the data loaded in napari layers.

Available widgets¶

Slice¶

Plots 1D slices of data along a specified axis.

Histogram¶

Plots histograms of individual image layers, or RGB histograms of an RGB image

Scatter¶

Scatters the values of two similarly sized images layers against each other.

Installation¶

You can install napari-matplotlib via pip:

pip install napari-matplotlib

To install latest development version :

pip install git+https://github.com/dstansby/napari-matplotlib.git

Contributing¶

Contributions are very welcome! Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License¶

Distributed under the terms of the BSD-3 license, napari-matplotlib is free and open source software.

Issues¶

If you encounter any problems, please file an issue along with a detailed description.