Version:

  • 0.0.4

Release date:

  • 20 April 2022

First released:

  • 17 March 2022

License:

  • BSD-3-Clause

Supported data:

  • Information not submitted

GitHub activity:

  • Stars: 6
  • Forks: 1
  • Issues + PRs: 4

GitHub activity:

  • Stars: 6
  • Forks: 1
  • Issues + PRs: 4

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • leidenalg
  • napari-clusters-plotter
  • napari-skimage-regionprops
  • napari[all]
  • numpy (<1.22)
  • pymeshfix
  • scanpy
  • scikit-image (>0.19.0)
  • scikit-learn
  • tqdm
  • trimesh[easy]

morphometrics

A plugin for quantifying shape and neighborhoods from images.


    Authors:

    • Kevin Yamauchi

    Source code:

    Authors:

    • Kevin Yamauchi

    Source code:

    License PyPI Python Version tests codecov napari hub

    A plugin for quantifying shape and neighborhoods from images.


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Installation

    You can install morphometrics via pip:

    pip install morphometrics

    To install latest development version :

    pip install git+https://github.com/kevinyamauchi/morphometrics.git

    Example applications

    measure the distance between surfaces

    napari plugin for measuring properties of segmented objects (regionprops)

    object classification

    mesh binary mask

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "morphometrics" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.0.4

    Release date:

    • 20 April 2022

    First released:

    • 17 March 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 6
    • Forks: 1
    • Issues + PRs: 4

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • leidenalg
    • napari-clusters-plotter
    • napari-skimage-regionprops
    • napari[all]
    • numpy (<1.22)
    • pymeshfix
    • scanpy
    • scikit-image (>0.19.0)
    • scikit-learn
    • tqdm
    • trimesh[easy]

    Version:

    • 0.0.4

    Release date:

    • 20 April 2022

    First released:

    • 17 March 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 6
    • Forks: 1
    • Issues + PRs: 4

    GitHub activity:

    • Stars: 6
    • Forks: 1
    • Issues + PRs: 4

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • leidenalg
    • napari-clusters-plotter
    • napari-skimage-regionprops
    • napari[all]
    • numpy (<1.22)
    • pymeshfix
    • scanpy
    • scikit-image (>0.19.0)
    • scikit-learn
    • tqdm
    • trimesh[easy]

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