trackastra

A napari plugin for cell tracking with trackastra.

Installation¶

Install the latest version from PyPI with:

pip install napari-trackastra

For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main trackastra package.

Notes:

• On Windows currently only supported for Python 3.10.

Usage¶

• trackastra expects a timeseries of raw images and corresponding segmentations masks as input.
• We provide some demo data at File > Open Sample > trackastra.
• Tracked cells can be directly saved to Cell Tracking Challenge format.
• Results can be drag-and-dropped back into napari for inspection.