Merge StarDist Masks

napari-merge-stardist-masks

Segment non-star-convex objects with StarDist by merging masks.


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    License BSD-3 PyPI Python Version tests codecov napari hub

    Segment non-star-convex objects with StarDist by merging masks.


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Run

    In PowerShell, when you do not have sufficient GPU support, run napari without CUDA support, i.e.,:

    $env:CUDA_VISIBLE_DEVICES=-1; napari

    Installation

    You can install napari-merge-stardist-masks via pip:

    pip install napari-merge-stardist-masks

    To install latest development version :

    pip install git+https://github.com/gatoniel/napari-merge-stardist-masks.git

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-merge-stardist-masks" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.0.3

    Release date:

    • 23 November 2022

    First released:

    • 31 August 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    Plugin type:

    GitHub activity:

    • Stars: 0
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • magicgui
    • qtpy
    • stardist-napari (>=2022.7.5)
    • merge-stardist-masks (>=0.1.0)

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