Merge StarDist Masks

napari-merge-stardist-masks

Segment non-star-convex objects with StarDist by merging masks.

License BSD-3 PyPI Python Version tests codecov napari hub

Segment non-star-convex objects with StarDist by merging masks.


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Run

In PowerShell, when you do not have sufficient GPU support, run napari without CUDA support, i.e.,:

$env:CUDA_VISIBLE_DEVICES=-1; napari

Installation

You can install napari-merge-stardist-masks via pip:

pip install napari-merge-stardist-masks

To install latest development version :

pip install git+https://github.com/gatoniel/napari-merge-stardist-masks.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-merge-stardist-masks" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.4

Last updated:

  • 16 January 2023

First released:

  • 31 August 2022

License:

  • BSD-3-Clause

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 1
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • stardist-napari (>=2022.7.5)
  • merge-stardist-masks (>=0.1.0)

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