napari-brainbow-diagnose

Visualize and Diagnose brainbow dataset in color space.

Pitch¶

Brainbow dataset have unique features that need to be addressed by specialized tools. This plugin aims at visualize and diagnose brainbow dataset. In particular we want to interact with the distribution of the dataset in the channel space.

Dev Installation¶

conda create -n napari-brainbow-diagnose python=3.9
conda activate napari-brainbow-diagnose
conda install pip
git clone git@github.com:LaboratoryOpticsBiosciences/napari-brainbow-diagnose.git
cd napari-brainbow-diagnose
pip install -e .[testing]
pre-commit install

Do not forget to run pytest pytest . before you commit to check your code.

Installation¶

You can install napari-brainbow-diagnose via pip:

pip install napari-brainbow-diagnose

To install latest development version :

pip install git+https://github.com/LaboratoryOpticsBiosciences/napari-brainbow-diagnose.git

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License¶

Distributed under the terms of the BSD-3 license, "napari-brainbow-diagnose" is free and open source software

Issues¶

If you encounter any problems, please file an issue along with a detailed description.

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