platelet-unet-watershed

Segment platelets with pretrained unet and affinity watershed

  • Juan Nunez-Iglesias & Abigail McGovern

License PyPI Python Version tests codecov

Segment platelets with pretrained unet and affinity watershed


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Installation

You can install platelet-unet-watershed via pip:

pip install platelet-unet-watershed

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "platelet-unet-watershed" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.3

Last updated:

  • 2021-09-20

First released:

  • 2021-07-01

License:

  • BSD-3

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • magicgui>=0.2.11
  • napari>=0.4.11
  • napari-plugin-engine>=0.1.4
  • numba>=0.50
  • numpy
  • scikit-image
  • scipy
  • toolz
  • torch
  • torchvision
  • tqdm
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