PartSeg
PartSegPartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,
First released:
14 January 2019Last updated:
12 May 2025Installs:
8.2KPlugin type:
Reader, Widget, Writer
Plugins
Browse plugins: 501
Cut Detector
cut-detectorAutomatic Cut Detector
- Thomas Bonte
First released:
17 October 2023Last updated:
12 May 2025Installs:
663Plugin type:
Widget
napari molecule reader
napari-molecule-readerA napari plugin that read molecular structure files.
- Lorenzo Gaifas
First released:
21 December 2021Last updated:
12 May 2025Installs:
213Plugin type:
Reader
NuclePhaser
napari-nuclephaserA Napari plugin to detect and count nuclei on phase contrast images
- Nikita Voloshin
First released:
02 April 2025Last updated:
12 May 2025Installs:
62Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari-omero
napari-omeronapari/OMERO interoperability
- Peter Sobolewski
First released:
24 June 2020Last updated:
11 May 2025Installs:
897Plugin type:
Reader, Widget
nDev
napari-ndevnapari widgets to (batch) process images from start to finish.
First released:
31 January 2023Last updated:
09 May 2025Installs:
1.4KPlugin type:
Reader, Widget
napari feature classifier
napari-feature-classifierAn interactive classifier plugin to use with label images and feature measurements
- Joel Luethi
- Max Hess
First released:
12 February 2022Last updated:
08 May 2025Installs:
1.1KPlugin type:
Widget
movement
movementAnalysis of body movement
First released:
02 April 2020Last updated:
07 May 2025Installs:
4.9KPlugin type:
Widget
T-MIDAS
napari-tmidasA plugin for batch processing of confocal and whole-slide microscopy images of biological tissues
- Marco Meer
First released:
05 March 2025Last updated:
07 May 2025Installs:
132Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation
Hyperspectral Imaging Analysis Plugin
napari-hsi-analysisNapari plugin to perform analysis on Hyperspectral Imaging datasets.
- Alessia Di Benedetto
First released:
12 March 2025Last updated:
06 May 2025Installs:
82Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
vollseg-napari-trackmate
vollseg-napari-trackmateTrack analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
31 December 2022Last updated:
05 May 2025Installs:
1.7KPlugin type:
Sample data, Widget
CCI Annotator
napari-cci-annotatorPlugin to simplify annotations of datasets
- Anders Folkesson
First released:
28 April 2025Last updated:
05 May 2025Installs:
75Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
PSSR2
pssrPoint-Scanning Super-Resolution 2
- Hayden Stites
First released:
17 April 2024Last updated:
04 May 2025Installs:
488Plugin type:
Widget
3D Counter
napari-3d-counterA simple plugin for counting objects in 3D images
- Peter Newstein
First released:
18 October 2023Last updated:
02 May 2025Installs:
666Plugin type:
Widget
napari-assistant
napari-assistantA pocket calculator like interface to image processing in napari
- Robert Haase
- Ryan Savill
First released:
05 March 2022Last updated:
02 May 2025Installs:
28KPlugin type:
Widget