napari ARCOS
arcos-guiA napari plugin to detect and visualize collective signaling events
- Benjamin Grädel
First released:
24 February 2022Last updated:
22 September 2023Installs:
265Plugin type:
Sample data, Widget
Plugins
Browse plugins: 351
ToMoDL Reconstruction
napari-tomodlA plugin for optical projection tomography reconstruction with model-based neural networks.
- [Marcos Antonio Obando
- Germán Mato
- Teresa Correia]
First released:
15 March 2023Last updated:
22 September 2023Installs:
113Plugin type:
Widget
napari-bacseg
napari-bacsegBacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
- Piers Turner
First released:
24 February 2023Last updated:
22 September 2023Installs:
167Plugin type:
information not submitted
CZANN Segmentation
napari-czann-segmentSemantic Segmentation using Deep Learning ONNX models packaged as *.czann files
- Sebastian Rhode
First released:
11 July 2022Last updated:
22 September 2023Installs:
271Plugin type:
Widget
napari-openfibsem
napari-openfibsemOpenFIBSEM Applications
- Patrick Cleeve
First released:
22 September 2023Last updated:
22 September 2023Installs:
0Plugin type:
information not submitted
napari-micromanager
napari-micromanagerMicro-Manager GUI interface in napari.
First released:
15 August 2021Last updated:
21 September 2023Installs:
374Plugin type:
Widget
blik
blikPython tool for visualising and interacting with cryo-ET and subtomogram averaging data.
First released:
15 June 2021Last updated:
20 September 2023Installs:
303Plugin type:
Reader, Widget, Writer
napari-psf-analysis
napari-psf-analysisA plugin to analyse point spread functions (PSFs).
- Tim-Oliver Buchholz
First released:
30 March 2022Last updated:
20 September 2023Installs:
225Plugin type:
Widget
Napari Parallel
napari-parallelPlugin to process images in parallel using several computers
- Artem Tomilo
- Nafisa Anjum
- Himanshu Kaloni
First released:
20 September 2023Last updated:
20 September 2023Installs:
7Plugin type:
Reader, Sample data, Widget, Writer
napari generic SIMulator
napari-generic-SIMulatorA napari plugin to simulate raw-image stacks of Structured illumination microscopy (SIM).
- Meizhu Liang
First released:
30 June 2022Last updated:
19 September 2023Installs:
225Plugin type:
Widget
napari DeepLabCut
napari-deeplabcutnapari + DeepLabCut annotation tool
- Team DeepLabCut
- Lead by Jessy Lauer
First released:
03 June 2022Last updated:
18 September 2023Installs:
17KPlugin type:
Reader, Widget, Writer
vollseg-napari-trackmate
vollseg-napari-trackmateTrack analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
31 December 2022Last updated:
18 September 2023Installs:
739Plugin type:
Sample data, Widget, Writer
mikro-napari
mikro-napariA napari plugin to interact with and provide functionality for a connected arkitekt server
- jhnnsrs
First released:
30 September 2021Last updated:
18 September 2023Installs:
304Plugin type:
information not submitted
Workshop 2023 demo plugin
napari-workshop-pluginA plugin to demonstrate some concepts from the 2023 workshop on software development related to napari
- MetaCell
First released:
06 September 2023Last updated:
18 September 2023Installs:
20Plugin type:
Reader, Sample data, Widget
Multiplex Registration
multiregRegistration of 3D multiplex images with one common chanel
- Gaëlle Letort
First released:
09 June 2023Last updated:
18 September 2023Installs:
129Plugin type:
Widget