Plugins

Browse plugins: 351

napari ARCOS

arcos-gui

A napari plugin to detect and visualize collective signaling events

  • Benjamin Grädel
  • First released:

    24 February 2022
  • Last updated:

    22 September 2023
  • Installs:

    265
  • Plugin type:

    Sample data, Widget

ToMoDL Reconstruction

napari-tomodl

A plugin for optical projection tomography reconstruction with model-based neural networks.

  • [Marcos Antonio Obando
  • Germán Mato
  • Teresa Correia]
  • First released:

    15 March 2023
  • Last updated:

    22 September 2023
  • Installs:

    113
  • Plugin type:

    Widget

napari-bacseg

napari-bacseg

Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.

  • Piers Turner
  • First released:

    24 February 2023
  • Last updated:

    22 September 2023
  • Installs:

    167
  • Plugin type:

    information not submitted

CZANN Segmentation

napari-czann-segment

Semantic Segmentation using Deep Learning ONNX models packaged as *.czann files

  • Sebastian Rhode
  • First released:

    11 July 2022
  • Last updated:

    22 September 2023
  • Installs:

    271
  • Plugin type:

    Widget

napari-openfibsem

napari-openfibsem

OpenFIBSEM Applications

  • Patrick Cleeve
  • First released:

    22 September 2023
  • Last updated:

    22 September 2023
  • Installs:

    0
  • Plugin type:

    information not submitted

napari-micromanager

napari-micromanager

Micro-Manager GUI interface in napari.

    • First released:

      15 August 2021
    • Last updated:

      21 September 2023
    • Installs:

      374
    • Plugin type:

      Widget

    blik

    blik

    Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

      • First released:

        15 June 2021
      • Last updated:

        20 September 2023
      • Installs:

        303
      • Plugin type:

        Reader, Widget, Writer

      napari-psf-analysis

      napari-psf-analysis

      A plugin to analyse point spread functions (PSFs).

      • Tim-Oliver Buchholz
      • First released:

        30 March 2022
      • Last updated:

        20 September 2023
      • Installs:

        225
      • Plugin type:

        Widget

      Napari Parallel

      napari-parallel

      Plugin to process images in parallel using several computers

      • Artem Tomilo
      • Nafisa Anjum
      • Himanshu Kaloni
      • First released:

        20 September 2023
      • Last updated:

        20 September 2023
      • Installs:

        7
      • Plugin type:

        Reader, Sample data, Widget, Writer

      napari generic SIMulator

      napari-generic-SIMulator

      A napari plugin to simulate raw-image stacks of Structured illumination microscopy (SIM).

      • Meizhu Liang
      • First released:

        30 June 2022
      • Last updated:

        19 September 2023
      • Installs:

        225
      • Plugin type:

        Widget

      napari DeepLabCut

      napari-deeplabcut

      napari + DeepLabCut annotation tool

      • Team DeepLabCut
      • Lead by Jessy Lauer
      • First released:

        03 June 2022
      • Last updated:

        18 September 2023
      • Installs:

        17K
      • Plugin type:

        Reader, Widget, Writer

      vollseg-napari-trackmate

      vollseg-napari-trackmate

      Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

      • Varun Kapoor
      • Mari Tolonen
      • Jakub Sedzinski
      • First released:

        31 December 2022
      • Last updated:

        18 September 2023
      • Installs:

        739
      • Plugin type:

        Sample data, Widget, Writer

      mikro-napari

      mikro-napari

      A napari plugin to interact with and provide functionality for a connected arkitekt server

      • jhnnsrs
      • First released:

        30 September 2021
      • Last updated:

        18 September 2023
      • Installs:

        304
      • Plugin type:

        information not submitted

      Workshop 2023 demo plugin

      napari-workshop-plugin

      A plugin to demonstrate some concepts from the 2023 workshop on software development related to napari

      • MetaCell
      • First released:

        06 September 2023
      • Last updated:

        18 September 2023
      • Installs:

        20
      • Plugin type:

        Reader, Sample data, Widget

      Multiplex Registration

      multireg

      Registration of 3D multiplex images with one common chanel

      • Gaëlle Letort
      • First released:

        09 June 2023
      • Last updated:

        18 September 2023
      • Installs:

        129
      • Plugin type:

        Widget

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