Plugins

Browse plugins: 442

napari feature classifier

napari-feature-classifier

An interactive classifier plugin to use with label images and feature measurements

  • Joel Luethi
  • Maks Hess
  • First released:

    12 February 2022
  • Last updated:

    26 July 2024
  • Installs:

    653
  • Plugin type:

    Widget

De Palma lab

depalma-napari-omero

Napari interface for the De Palma lab.

    • First released:

      26 July 2024
    • Last updated:

      26 July 2024
    • Installs:

      44
    • Plugin type:

      Widget

    napatrackmater

    napatrackmater

    Import Trackmate XML files for Track Visualization and analysis in Napari.

    • Varun Kapoor
    • Mari Tolonen
    • Jakub Sedzinski
    • First released:

      16 January 2021
    • Last updated:

      26 July 2024
    • Installs:

      5.6K
    • Plugin type:

      information not submitted

    brainrender

    brainrender-napari

    A napari plugin to render BrainGlobe atlases and associated data as layers.

    • Alessandro Felder
    • BrainGlobe Developers
    • First released:

      13 October 2023
    • Last updated:

      26 July 2024
    • Installs:

      2.5K
    • Plugin type:

      Widget

    Napari Feature Visualization

    napari-feature-visualization

    Visualizing feature measurements on label images in napari

    • Joel Luethi
    • Adrian Tschan
    • First released:

      25 July 2024
    • Last updated:

      25 July 2024
    • Installs:

      12
    • Plugin type:

      Sample data, Widget
    Workflow step:
    Image annotation

    napari organoid counter

    napari-organoid-counter

    A plugin to automatically count lung organoids using Deep Learning.

    • christinab12
    • First released:

      13 April 2022
    • Last updated:

      25 July 2024
    • Installs:

      212
    • Plugin type:

      Reader, Widget

    MolTrack

    napari-moltrack

    A user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.

    • Piers Turner
    • First released:

      30 May 2024
    • Last updated:

      25 July 2024
    • Installs:

      510
    • Plugin type:

      Widget
    Workflow step:
    Image segmentation
    Image annotation

    molSEEQ

    napari-molseeq

    A Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.

    • Piers Turner
    • First released:

      25 July 2024
    • Last updated:

      25 July 2024
    • Installs:

      10
    • Plugin type:

      Widget
    Workflow step:
    Image segmentation
    Image annotation

    TARDIS-em napari plugin

    napari-tardis-em

    Tomogram and micrograph segmentation with TARDIS-em

    • Robert Kiewisz
    • First released:

      22 July 2024
    • Last updated:

      24 July 2024
    • Installs:

      55
    • Plugin type:

      Widget

    TraceAnalyser

    TraceAnalyser

    Time Series Analysis Software

    • Piers Turner
    • First released:

      08 July 2024
    • Last updated:

      24 July 2024
    • Installs:

      68
    • Plugin type:

      information not submitted

    domb-napari

    domb-napari

    napari plugin for analyzing fluorescence-labeled proteins redistribution

    • Borys Olifirov
    • First released:

      22 November 2023
    • Last updated:

      23 July 2024
    • Installs:

      269
    • Plugin type:

      Widget

    hipocount-napari

    hipocount-napari

    Quantitative analysis of immunofluorescence images of hippocampal slices

    • Borys Olifirov
    • First released:

      05 February 2024
    • Last updated:

      23 July 2024
    • Installs:

      80
    • Plugin type:

      Widget

    napari-spotiflow

    napari-spotiflow

    Napari plugin for Spotiflow

    • Albert Dominguez Mantes
    • Martin Weigert
    • First released:

      02 February 2024
    • Last updated:

      23 July 2024
    • Installs:

      148
    • Plugin type:

      Reader, Sample data, Widget

    Nellie

    nellie

    Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

    • Austin E. Y. T. Lefebvre
    • First released:

      21 March 2024
    • Last updated:

      22 July 2024
    • Installs:

      388
    • Plugin type:

      Widget

    napari-cosmos-ts

    napari-cosmos-ts

    napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis

    • Marcel Goldschen-Ohm
    • First released:

      11 April 2024
    • Last updated:

      22 July 2024
    • Installs:

      68
    • Plugin type:

      Widget