CellSeg3D
napari-cellseg3dPlugin for cell segmentation in 3D
First released:
25 June 2022Last updated:
13 May 2024Installs:
752Plugin type:
Widget
Plugins
Browse plugins: 413
napatrackmater
napatrackmaterImport Trackmate XML files for Track Visualization and analysis in Napari.
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
16 January 2021Last updated:
12 May 2024Installs:
5.2KPlugin type:
information not submitted
BacSeg
napari-bacsegBacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
First released:
24 February 2023Last updated:
09 May 2024Installs:
424Plugin type:
Widget
cylindra
cylindraSpectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures
- Hanjin Liu
First released:
01 May 2024Last updated:
07 May 2024Installs:
123Plugin type:
information not submitted
BaSiCpy shadow correction in napari
napari-basicpyBaSiCPy illumination correction for napari
- Tim Morello
First released:
20 January 2022Last updated:
06 May 2024Installs:
106Plugin type:
Sample data, Widget
napari-cosmos-ts
napari-cosmos-tsnapari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis
First released:
11 April 2024Last updated:
06 May 2024Installs:
32Plugin type:
Widget
napari-mm3
napari-mm3a plugin for mother machine image analysis
- Gursharan Ahir
- Michael Sandler
- Ryan Thiermann
First released:
02 June 2022Last updated:
06 May 2024Installs:
319Plugin type:
Widget
3D Movies Registration
napari-3dtimeregRegistration of 3D movies applied to all channels
- Gaëlle Letort
First released:
05 April 2024Last updated:
06 May 2024Installs:
71Plugin type:
Widget
brainreg
brainregAutomated multi-atlas whole-brain microscopy registration
- Adam Tyson
- Charly Rousseau
- Stephen Lenzi
- BrainGlobe Developers
First released:
26 May 2020Last updated:
03 May 2024Installs:
8.2KPlugin type:
Sample data, Widget
vollseg-napari-trackmate
vollseg-napari-trackmateTrack analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
31 December 2022Last updated:
01 May 2024Installs:
1.3KPlugin type:
Sample data, Widget
napari-nyxus
napari-nyxusA napari plugin for calculating features from intensity-label image data
- Jesse McKinzie
First released:
05 May 2023Last updated:
01 May 2024Installs:
87Plugin type:
Widget
napari-conidie
napari-conidieA segmentation tool to get conidie and hyphe
- Herearii Metuarea
First released:
15 December 2022Last updated:
29 April 2024Installs:
54Plugin type:
information not submitted
nap-plot-tools
nap-plot-toolsA NAPari PLOTter TOOLbar and tools for additional functionalities.
- Marcelo Leomil Zoccoler
First released:
10 November 2023Last updated:
29 April 2024Installs:
793Plugin type:
information not submitted
napari_psf_analysis
napari-psf-analysisA plugin to analyse point spread functions (PSFs).
- Tim-Oliver Buchholz
First released:
30 March 2022Last updated:
29 April 2024Installs:
453Plugin type:
Widget
3D Counter
napari-3d-counterA simple plugin for counting objects in 3D images
- Peter Newstein
First released:
18 October 2023Last updated:
26 April 2024Installs:
259Plugin type:
Widget