Plugins

Browse plugins: 439

Nellie

nellie

Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

  • Austin E. Y. T. Lefebvre
  • First released:

    21 March 2024
  • Last updated:

    22 July 2024
  • Installs:

    373
  • Plugin type:

    Widget

MolTrack

napari-moltrack

Single molecule tracking package for Napari

  • Piers Turner
  • First released:

    30 May 2024
  • Last updated:

    22 July 2024
  • Installs:

    459
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

napari-cosmos-ts

napari-cosmos-ts

napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis

  • Marcel Goldschen-Ohm
  • First released:

    11 April 2024
  • Last updated:

    22 July 2024
  • Installs:

    50
  • Plugin type:

    Widget

TARDIS-em napari plugin

napari-tardis-em

Tomogram and micrograph segmentation with TARDIS-em

  • Robert Kiewisz
  • First released:

    22 July 2024
  • Last updated:

    22 July 2024
  • Installs:

    0
  • Plugin type:

    Widget

Cut Detector

cut-detector

Automatic Cut Detector

  • Thomas Bonte
  • First released:

    17 October 2023
  • Last updated:

    22 July 2024
  • Installs:

    295
  • Plugin type:

    Widget

napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    16 January 2021
  • Last updated:

    21 July 2024
  • Installs:

    5.5K
  • Plugin type:

    information not submitted

vollseg-napari-trackmate

vollseg-napari-trackmate

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    31 December 2022
  • Last updated:

    20 July 2024
  • Installs:

    1.3K
  • Plugin type:

    Sample data, Widget

napari OME-Zarr Navigator

napari-ome-zarr-navigator

A plugin to browse OME-Zarr plates by conditions and load images, labels and features from ROIs

  • Fabio Steffen
  • Joel Luethi
  • First released:

    19 July 2024
  • Last updated:

    19 July 2024
  • Installs:

    14
  • Plugin type:

    Sample data, Widget
Workflow step:
Visualization

napari feature classifier

napari-feature-classifier

An interactive classifier plugin to use with label images and feature measurements

  • Joel Luethi
  • Maks Hess
  • First released:

    12 February 2022
  • Last updated:

    19 July 2024
  • Installs:

    637
  • Plugin type:

    Widget

anchor_droplet_chip

anchor-droplet-chip

Segment organoids and measure intensities

  • Andrey Aristov
  • First released:

    13 March 2023
  • Last updated:

    19 July 2024
  • Installs:

    478
  • Plugin type:

    Reader, Sample data, Widget

cellfinder

cellfinder

Automated 3D cell detection in large microscopy images

  • Adam Tyson
  • Christian Niedworok
  • Charly Rousseau
  • BrainGlobe Developers
  • First released:

    17 January 2020
  • Last updated:

    19 July 2024
  • Installs:

    7.7K
  • Plugin type:

    Sample data, Widget

napari vedo bridge

napari-vedo-bridge

Transfer mesh data between napari and vedo for interactive processing

  • Johannes Soltwedel
  • Marco Musy
  • First released:

    03 July 2023
  • Last updated:

    19 July 2024
  • Installs:

    108
  • Plugin type:

    Reader, Widget, Writer

microscope-napari

microscope-napari

Nanobiosensorics microscopic napari plugin.

  • Nanobiosensorics
  • First released:

    21 June 2024
  • Last updated:

    18 July 2024
  • Installs:

    83
  • Plugin type:

    Sample data, Widget

napari-stress

napari-stress

Interactive surface analysis in napari for measuring mechanical stresses in biological tissues

  • Johannes Soltwedel
  • Ben J. Gross
  • Elijah Shelton
  • Carlos Gomez
  • Otger Campas
  • First released:

    02 June 2022
  • Last updated:

    17 July 2024
  • Installs:

    912
  • Plugin type:

    information not submitted

3D Counter

napari-3d-counter

A simple plugin for counting objects in 3D images

  • Peter Newstein
  • First released:

    18 October 2023
  • Last updated:

    17 July 2024
  • Installs:

    365
  • Plugin type:

    Widget