TARDIS-em napari plugin
napari-tardis-emTomogram and micrograph segmentation with TARDIS-em
- Robert Kiewisz
First released:
22 July 2024Last updated:
02 July 2025Installs:
292Plugin type:
Reader, Widget
Plugins
Browse plugins: 509
napari NanoPyx
napari-nanopyxnapari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
- Ricardo Henriques
- Bruno Saraiva
- Inês Cunha
- António Brito
First released:
10 May 2023Last updated:
02 July 2025Installs:
644Plugin type:
Widget
seu-3d
seu-3d3d spatial visualization napari plugin
First released:
26 May 2025Last updated:
02 July 2025Installs:
0Plugin type:
Widget
Leonardo-DeStripe
LSFM-destripe-napariA simple plugin to destripe microscopy images in napari
- lennart kowitz
First released:
12 December 2024Last updated:
02 July 2025Installs:
111Plugin type:
Reader, Widget, Writer
Workflow step:
Visualization
Leonardo-Fuse
LSFM-fusion-napariA simple plugin to fuse microscopy images in napari
- lennart kowitz
First released:
13 December 2024Last updated:
02 July 2025Installs:
120Plugin type:
Widget, Writer
Workflow step:
Visualization
Segment Anything V2
napari-SAMV2Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.
- Krishnan Venkataraman
First released:
08 October 2024Last updated:
01 July 2025Installs:
604Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
3D Counter
napari-3d-counterA simple plugin for counting objects in 3D images
- Peter Newstein
First released:
18 October 2023Last updated:
01 July 2025Installs:
666Plugin type:
Widget
Microscopy Array Section Setup
napari-massMicroscopy Array Section Setup napari plugin
- Joost de Folter
First released:
30 June 2025Last updated:
30 June 2025Installs:
0Plugin type:
Reader, Widget
Workflow step:
Image annotation
Image segmentation
NIfTI Viewer
napari-nifti-viewerA comprehensive napari plugin for NIfTI file analysis and visualization
- Yohanchiu
First released:
28 June 2025Last updated:
28 June 2025Installs:
0Plugin type:
Widget
AlveolEye
AlveolEyeReads lung slides with AI-driven and classical methods
- Joseph Hirsh
First released:
22 May 2024Last updated:
27 June 2025Installs:
154Plugin type:
Reader, Sample data, Widget, Writer
napari feature classifier
napari-feature-classifierAn interactive classifier plugin to use with label images and feature measurements
- Joel Luethi
- Max Hess
First released:
12 February 2022Last updated:
27 June 2025Installs:
1.1KPlugin type:
Widget
Napari Feature Visualization
napari-feature-visualizationVisualizing feature measurements on label images in napari
- Joel Luethi
- Adrian Tschan
First released:
25 July 2024Last updated:
27 June 2025Installs:
183Plugin type:
Sample data, Widget
Workflow step:
Image annotation
AxonDeepSeg
AxonDeepSegAxon/Myelin segmentation using AI
First released:
09 December 2017Last updated:
27 June 2025Installs:
2.1KPlugin type:
Widget
Workflow step:
Image annotation
Image segmentation
ImageGrains
napari-imagegrainsAn interactive napari plugin for the ImageGrains software.
First released:
26 June 2025Last updated:
26 June 2025Installs:
0Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Hyperspectral Imaging Analysis Plugin
napari-hsi-analysisNapari plugin to perform analysis on Hyperspectral Imaging datasets.
- Alessia Di Benedetto
First released:
12 March 2025Last updated:
23 June 2025Installs:
82Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation