Plugins

Browse plugins: 417

napari-cosmos-ts

napari-cosmos-ts

napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis

  • Marcel Goldschen-Ohm
  • First released:

    11 April 2024
  • Last updated:

    30 May 2024
  • Installs:

    32
  • Plugin type:

    Widget

trackastra

napari-trackastra

trackastra tracking

    • First released:

      30 May 2024
    • Last updated:

      30 May 2024
    • Installs:

      0
    • Plugin type:

      Sample data, Widget
    Workflow step:
    Image segmentation

    napari-skimage

    napari-skimage

    A plugin to apply scikit-image operations

    • Guillaume Witz
    • First released:

      29 May 2024
    • Last updated:

      30 May 2024
    • Installs:

      13
    • Plugin type:

      information not submitted

    brainglobe-segmentation

    brainglobe-segmentation

    Segmentation of anatomical structures in a common coordinate space

    • Adam Tyson
    • Horst Obenhaus
    • BrainGlobe Developers
    • First released:

      06 November 2023
    • Last updated:

      29 May 2024
    • Installs:

      2.5K
    • Plugin type:

      Widget

    cell-AAP

    cell-AAP

    • Anish Virdi
    • First released:

      28 May 2024
    • Last updated:

      28 May 2024
    • Installs:

      38
    • Plugin type:

      Widget

    Melt Pool Tracker

    napari-melt-pool-tracker

    Plugin for tracking the width and depth of the melt pool and keyhole in x-ray images of laser powder bed fusion experiments.

    • Florian Aymanns
    • First released:

      02 November 2023
    • Last updated:

      28 May 2024
    • Installs:

      60
    • Plugin type:

      Reader, Sample data, Widget, Writer

    napatrackmater

    napatrackmater

    Import Trackmate XML files for Track Visualization and analysis in Napari.

    • Varun Kapoor
    • Mari Tolonen
    • Jakub Sedzinski
    • First released:

      16 January 2021
    • Last updated:

      26 May 2024
    • Installs:

      5.3K
    • Plugin type:

      information not submitted

    yt-napari

    yt-napari

    A napari plugin for loading data from yt

    • Chris Havlin
    • First released:

      02 May 2022
    • Last updated:

      23 May 2024
    • Installs:

      176
    • Plugin type:

      Reader, Widget

    Motile

    motile-plugin

    Tracking with motile

    • Caroline Malin-Mayor
    • First released:

      23 May 2024
    • Last updated:

      23 May 2024
    • Installs:

      12
    • Plugin type:

      Sample data, Widget

    AlveolEye

    AlveolEye

    Reads lung slides with AI-driven and classical methods

    • Joseph Hirsh
    • First released:

      22 May 2024
    • Last updated:

      22 May 2024
    • Installs:

      17
    • Plugin type:

      Reader, Sample data, Widget, Writer

    Cut Detector

    cut-detector

    Automatic Cut Detector

    • Thomas Bonte
    • First released:

      17 October 2023
    • Last updated:

      22 May 2024
    • Installs:

      248
    • Plugin type:

      Widget

    CryoET Data Portal

    napari-cryoet-data-portal

    List, preview, and open data from the CZII CryoET Data Portal

    • Andy Sweet
    • First released:

      14 August 2023
    • Last updated:

      21 May 2024
    • Installs:

      253
    • Plugin type:

      Reader, Sample data, Widget

    PixSeq

    napari-PixSeq

    A Napari plugin for extracting time series traces from Single Molecule Localisation Microsocpy (SMLM) data.

    • Piers Turner
    • First released:

      29 February 2024
    • Last updated:

      21 May 2024
    • Installs:

      35
    • Plugin type:

      Widget
    Workflow step:
    Image segmentation
    Image annotation

    ToMoDL Reconstruction

    napari-tomodl

    A plugin for optical projection tomography reconstruction with model-based neural networks.

    • Marcos Antonio Obando
    • Germán Mato
    • Teresa Correia
    • First released:

      15 March 2023
    • Last updated:

      20 May 2024
    • Installs:

      383
    • Plugin type:

      Widget

    Nellie

    nellie

    Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

    • Austin E. Y. T. Lefebvre
    • First released:

      21 March 2024
    • Last updated:

      20 May 2024
    • Installs:

      225
    • Plugin type:

      Widget

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