The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 509

TARDIS-em napari plugin

napari-tardis-em

Tomogram and micrograph segmentation with TARDIS-em

  • Robert Kiewisz
  • First released:

    22 July 2024
  • Last updated:

    02 July 2025
  • Installs:

    292
  • Plugin type:

    Reader, Widget

napari NanoPyx

napari-nanopyx

napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

  • Ricardo Henriques
  • Bruno Saraiva
  • Inês Cunha
  • António Brito
  • First released:

    10 May 2023
  • Last updated:

    02 July 2025
  • Installs:

    644
  • Plugin type:

    Widget

seu-3d

seu-3d

3d spatial visualization napari plugin

    • First released:

      26 May 2025
    • Last updated:

      02 July 2025
    • Installs:

      0
    • Plugin type:

      Widget

    Leonardo-DeStripe

    LSFM-destripe-napari

    A simple plugin to destripe microscopy images in napari

    • lennart kowitz
    • First released:

      12 December 2024
    • Last updated:

      02 July 2025
    • Installs:

      111
    • Plugin type:

      Reader, Widget, Writer
    Workflow step:
    Visualization

    Leonardo-Fuse

    LSFM-fusion-napari

    A simple plugin to fuse microscopy images in napari

    • lennart kowitz
    • First released:

      13 December 2024
    • Last updated:

      02 July 2025
    • Installs:

      120
    • Plugin type:

      Widget, Writer
    Workflow step:
    Visualization

    Segment Anything V2

    napari-SAMV2

    Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.

    • Krishnan Venkataraman
    • First released:

      08 October 2024
    • Last updated:

      01 July 2025
    • Installs:

      604
    • Plugin type:

      Widget
    Workflow step:
    Image segmentation
    Image annotation

    3D Counter

    napari-3d-counter

    A simple plugin for counting objects in 3D images

    • Peter Newstein
    • First released:

      18 October 2023
    • Last updated:

      01 July 2025
    • Installs:

      666
    • Plugin type:

      Widget

    Microscopy Array Section Setup

    napari-mass

    Microscopy Array Section Setup napari plugin

    • Joost de Folter
    • First released:

      30 June 2025
    • Last updated:

      30 June 2025
    • Installs:

      0
    • Plugin type:

      Reader, Widget
    Workflow step:
    Image annotation
    Image segmentation

    NIfTI Viewer

    napari-nifti-viewer

    A comprehensive napari plugin for NIfTI file analysis and visualization

    • Yohanchiu
    • First released:

      28 June 2025
    • Last updated:

      28 June 2025
    • Installs:

      0
    • Plugin type:

      Widget

    AlveolEye

    AlveolEye

    Reads lung slides with AI-driven and classical methods

    • Joseph Hirsh
    • First released:

      22 May 2024
    • Last updated:

      27 June 2025
    • Installs:

      154
    • Plugin type:

      Reader, Sample data, Widget, Writer

    napari feature classifier

    napari-feature-classifier

    An interactive classifier plugin to use with label images and feature measurements

    • Joel Luethi
    • Max Hess
    • First released:

      12 February 2022
    • Last updated:

      27 June 2025
    • Installs:

      1.1K
    • Plugin type:

      Widget

    Napari Feature Visualization

    napari-feature-visualization

    Visualizing feature measurements on label images in napari

    • Joel Luethi
    • Adrian Tschan
    • First released:

      25 July 2024
    • Last updated:

      27 June 2025
    • Installs:

      183
    • Plugin type:

      Sample data, Widget
    Workflow step:
    Image annotation

    AxonDeepSeg

    AxonDeepSeg

    Axon/Myelin segmentation using AI

      • First released:

        09 December 2017
      • Last updated:

        27 June 2025
      • Installs:

        2.1K
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      ImageGrains

      napari-imagegrains

      An interactive napari plugin for the ImageGrains software.

        • First released:

          26 June 2025
        • Last updated:

          26 June 2025
        • Installs:

          0
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation

        Hyperspectral Imaging Analysis Plugin

        napari-hsi-analysis

        Napari plugin to perform analysis on Hyperspectral Imaging datasets.

        • Alessia Di Benedetto
        • First released:

          12 March 2025
        • Last updated:

          23 June 2025
        • Installs:

          82
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation