The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 464

Motile

motile-plugin

Tracking with motile

    • First released:

      23 May 2024
    • Last updated:

      04 November 2024
    • Installs:

      256
    • Plugin type:

      Sample data, Widget

    napari Sediment

    napari-sediment

    A plugin to process hyperspectral images of sediments

    • Guillaume Witz
    • First released:

      23 September 2024
    • Last updated:

      02 November 2024
    • Installs:

      101
    • Plugin type:

      Reader, Widget

    Nellie

    nellie

    Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

    • Austin E. Y. T. Lefebvre
    • First released:

      21 March 2024
    • Last updated:

      31 October 2024
    • Installs:

      637
    • Plugin type:

      Widget

    neurofly

    neurofly

    A framework to annotate single neurons at whole-brain scale

      • First released:

        30 October 2024
      • Last updated:

        31 October 2024
      • Installs:

        28
      • Plugin type:

        information not submitted

      napari OME-Zarr Navigator

      napari-ome-zarr-navigator

      A plugin to browse OME-Zarr plates by conditions and load images, labels and features from ROIs

      • Fabio Steffen
      • Joel Luethi
      • First released:

        19 July 2024
      • Last updated:

        30 October 2024
      • Installs:

        160
      • Plugin type:

        Sample data, Widget
      Workflow step:
      Visualization

      Box Manager

      napari-boxmanager

      Particle selection tool for cryo-em

      • Markus Stabrin
      • First released:

        26 September 2022
      • Last updated:

        30 October 2024
      • Installs:

        5.2K
      • Plugin type:

        Reader, Widget, Writer

      qhyccd-capture

      qhyccd-capture

      The basic operations for QHYCCD series cameras

      • QHYCCD
      • First released:

        23 October 2024
      • Last updated:

        30 October 2024
      • Installs:

        60
      • Plugin type:

        information not submitted

      Napari Signal Selector

      napari-signal-selector

      An interactive signal selector for napari, based on matplotlib.

      • Marcelo Leomil Zoccoler
      • First released:

        17 October 2023
      • Last updated:

        29 October 2024
      • Installs:

        226
      • Plugin type:

        Sample data, Widget

      Save multidimensional file as folder of tifs

      napari-file2folder

      Save multidimensional file as folder of tifs

      • Jules Vanaret
      • First released:

        28 October 2024
      • Last updated:

        28 October 2024
      • Installs:

        8
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      Segment Anything V2

      napari-SAMV2

      Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.

      • Krishnan Venkataraman
      • First released:

        08 October 2024
      • Last updated:

        28 October 2024
      • Installs:

        82
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      Tapenade Processing

      napari-tapenade-processing

      A visual pipeline to process images with Tapenade in Napari

      • Jules Vanaret
      • Alice Gros
      • Valentin Dunsing Eichenauer
      • Agathe Rostan
      • Philippe Roudot
      • Pierre-François Lenne
      • Léo Guignard
      • Sham Tlili
      • First released:

        13 August 2024
      • Last updated:

        28 October 2024
      • Installs:

        71
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      Orthogonal Viewer

      napari-simple-orthoviewer

      A simple orthogonal viewer in napari

      • Krishnan Venkataraman
      • First released:

        08 October 2024
      • Last updated:

        28 October 2024
      • Installs:

        55
      • Plugin type:

        Widget
      Workflow step:
      Visualization

      napari-ndev

      napari-ndev

      A collection of widgets to process images from start to finish--focused on neural development.

      • Tim Monko
      • First released:

        31 January 2023
      • Last updated:

        28 October 2024
      • Installs:

        648
      • Plugin type:

        information not submitted

      skan

      skan

      Skeleton analysis in Python

        • First released:

          08 November 2016
        • Last updated:

          28 October 2024
        • Installs:

          63K
        • Plugin type:

          information not submitted

        Cut Detector

        cut-detector

        Automatic Cut Detector

        • Thomas Bonte
        • First released:

          17 October 2023
        • Last updated:

          28 October 2024
        • Installs:

          517
        • Plugin type:

          Widget