Plugins

Browse plugins: 409

ilastik plugin for napari

ilastik-napari

ilastik plugin for napari

    • First released:

      28 February 2023
    • Last updated:

      17 April 2024
    • Installs:

      313
    • Plugin type:

      Widget

    napari_stress

    napari-stress

    Interactive surface analysis in napari for measuring mechanical stresses in biological tissues

    • Johannes Soltwedel
    • Ben J. Gross
    • Elijah Shelton
    • Carlos Gomez
    • Otger Campas
    • First released:

      02 June 2022
    • Last updated:

      16 April 2024
    • Installs:

      856
    • Plugin type:

      Sample data

    Napari Imod Model

    napari-imodmodel

    Open IMOD model files in napari

    • Moritz Wachsmuth-Melm
    • First released:

      16 April 2024
    • Last updated:

      16 April 2024
    • Installs:

      8
    • Plugin type:

      Reader, Sample data

    napari-animation

    napari-animation

    A plugin for making animations in napari

    • Nicholas Sofroniew
    • Alister Burt
    • Guillaume Witz
    • Faris Abouakil
    • Talley Lambert
    • First released:

      23 April 2021
    • Last updated:

      16 April 2024
    • Installs:

      8K
    • Plugin type:

      Widget

    napari-tomodl

    napari-tomodl

    A plugin for optical projection tomography reconstruction with model-based neural networks.

    • Marcos Antonio Obando
    • Germán Mato
    • Teresa Correia
    • First released:

      15 March 2023
    • Last updated:

      15 April 2024
    • Installs:

      344
    • Plugin type:

      information not submitted

    blik

    blik

    Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

    • Lorenzo Gaifas
    • First released:

      15 June 2021
    • Last updated:

      15 April 2024
    • Installs:

      720
    • Plugin type:

      information not submitted

    TomoTwin

    napari-tomotwin

    Several tools for the work with TomoTwin

    • Thorsten Wagner
    • First released:

      24 March 2023
    • Last updated:

      15 April 2024
    • Installs:

      1.1K
    • Plugin type:

      Widget

    napatrackmater

    napatrackmater

    Import Trackmate XML files for Track Visualization and analysis in Napari.

    • Varun Kapoor
    • Mari Tolonen
    • Jakub Sedzinski
    • First released:

      16 January 2021
    • Last updated:

      14 April 2024
    • Installs:

      5.1K
    • Plugin type:

      information not submitted

    cellfinder

    cellfinder

    Automated 3D cell detection in large microscopy images

    • Adam Tyson
    • Christian Niedworok
    • Charly Rousseau
    • BrainGlobe Developers
    • First released:

      17 January 2020
    • Last updated:

      12 April 2024
    • Installs:

      6.5K
    • Plugin type:

      Sample data, Widget

    napari-cosmos-ts

    napari-cosmos-ts

    napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis

      • First released:

        11 April 2024
      • Last updated:

        12 April 2024
      • Installs:

        23
      • Plugin type:

        Widget

      BacSeg

      napari-bacseg

      Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.

        • First released:

          24 February 2023
        • Last updated:

          12 April 2024
        • Installs:

          405
        • Plugin type:

          Widget

        nap-plot-tools

        nap-plot-tools

        A NAPari PLOTter TOOLbar and tools for additional functionalities.

        • Marcelo Leomil Zoccoler
        • First released:

          10 November 2023
        • Last updated:

          11 April 2024
        • Installs:

          303
        • Plugin type:

          information not submitted

        Cut Detector

        cut-detector

        Automatic Cut Detector

        • Thomas Bonte
        • First released:

          17 October 2023
        • Last updated:

          11 April 2024
        • Installs:

          212
        • Plugin type:

          Widget

        In Silico Fate Mapping

        in-silico-fate-mapping

        TODO

        • Merlin Lange
        • Alejandro Granados
        • Shruthi VijayKumar
        • Jordao Bragantini
        • Sarah Ancheta
        • Sreejith Santhosh
        • Michael Borja
        • Hirofumi Kobayashi
        • Erin McGeever
        • Ahmet Can Solak
        • others
        • First released:

          27 February 2023
        • Last updated:

          10 April 2024
        • Installs:

          74
        • Plugin type:

          Reader, Widget, Writer

        napari-toothfairy-annotator

        napari-toothfairy-annotator

        The plugin employed to annotate volumes employed in the ToothFairy 2 Challenge

        • Luca Lumetti
        • First released:

          28 March 2024
        • Last updated:

          08 April 2024
        • Installs:

          143
        • Plugin type:

          information not submitted

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