The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 514

Napari Phasors

napari-phasors

A simple plugin to use phasor analysis

  • Bruno Pannunzio
  • Marcelo L. Zoccoler
  • Bruno Schuty
  • Leonel Malacrida
  • First released:

    22 November 2024
  • Last updated:

    08 July 2025
  • Installs:

    140
  • Plugin type:

    Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation

MolTrack

napari-moltrack

A user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.

  • Piers Turner
  • First released:

    30 May 2024
  • Last updated:

    08 July 2025
  • Installs:

    1.4K
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

Laber Manager

napari-laber-manager

A plugin for management of label colormap generation and opacity control

  • JH Wang
  • First released:

    07 July 2025
  • Last updated:

    08 July 2025
  • Installs:

    7
  • Plugin type:

    Widget

napari 3D registration

napari-3D-registration

A plugin to help registering fluorescent movies in space and time

  • Leo Guignard
  • First released:

    08 July 2025
  • Last updated:

    08 July 2025
  • Installs:

    0
  • Plugin type:

    Widget

movement

movement

Analysis of body movement

    • First released:

      02 April 2020
    • Last updated:

      08 July 2025
    • Installs:

      5.9K
    • Plugin type:

      Widget

    seu-3d

    seu-3d

    3d spatial visualization napari plugin

      • First released:

        26 May 2025
      • Last updated:

        08 July 2025
      • Installs:

        179
      • Plugin type:

        Widget

      ndev Sampledata

      ndev-sampledata

      Sample data for the ndev kit

      • Tim Monko
      • First released:

        05 July 2025
      • Last updated:

        07 July 2025
      • Installs:

        22
      • Plugin type:

        Sample data

      3D Counter

      napari-3d-counter

      A simple plugin for counting objects in 3D images

      • Peter Newstein
      • First released:

        18 October 2023
      • Last updated:

        07 July 2025
      • Installs:

        698
      • Plugin type:

        Widget

      molSEEQ

      napari-molseeq

      A Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.

      • Piers Turner
      • First released:

        25 July 2024
      • Last updated:

        06 July 2025
      • Installs:

        101
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      Bioio Reader

      napari-bioio-reader

      A simple plugin to use the Bioio reader in napari

      • Laurent Guerard
      • First released:

        04 July 2025
      • Last updated:

        04 July 2025
      • Installs:

        6
      • Plugin type:

        Reader

      psf-analysis-CFIM

      psf-analysis-CFIM

      A continuation of napari_psf_analysis, developed for CFIM - KU

      • Markus L. Bille
      • First released:

        11 February 2025
      • Last updated:

        04 July 2025
      • Installs:

        145
      • Plugin type:

        Reader, Widget

      AxonDeepSeg

      AxonDeepSeg

      Axon/Myelin segmentation using AI

        • First released:

          09 December 2017
        • Last updated:

          03 July 2025
        • Installs:

          2.9K
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation

        ebi_oct

        ebi-oct

        A package for analyzing optical coherence tomography (OCT) images for biofilm.

          • First released:

            03 July 2025
          • Last updated:

            03 July 2025
          • Installs:

            6
          • Plugin type:

            Widget

          TARDIS-em napari plugin

          napari-tardis-em

          Tomogram and micrograph segmentation with TARDIS-em

          • Robert Kiewisz
          • First released:

            22 July 2024
          • Last updated:

            02 July 2025
          • Installs:

            392
          • Plugin type:

            Reader, Widget

          napari NanoPyx

          napari-nanopyx

          napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

          • Ricardo Henriques
          • Bruno Saraiva
          • Inês Cunha
          • António Brito
          • First released:

            10 May 2023
          • Last updated:

            02 July 2025
          • Installs:

            721
          • Plugin type:

            Widget