The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 513

Feature Forest

featureforest

A napari plugin for segmentation using vision transformer features

    • First released:

      10 October 2024
    • Last updated:

      15 July 2025
    • Installs:

      204
    • Plugin type:

      Widget
    Workflow step:
    Image annotation
    Image segmentation

    DINOSim Segmentation

    napari-dinosim

    A simple plugin to use DINOSim in napari

    • Aitor Gonzalez-Marfil
    • First released:

      05 March 2025
    • Last updated:

      15 July 2025
    • Installs:

      170
    • Plugin type:

      Widget
    Workflow step:
    Image segmentation
    Image annotation

    seu-3d

    seu-3d

    3d spatial visualization napari plugin

      • First released:

        26 May 2025
      • Last updated:

        14 July 2025
      • Installs:

        228
      • Plugin type:

        Widget

      SimpleAnnotate

      napari-simpleannotate

      A napari plugin for simple image and video annotation

        • First released:

          29 October 2023
        • Last updated:

          14 July 2025
        • Installs:

          203
        • Plugin type:

          Widget

        napari-UniSPAC

        napari-UniSPAC

        A Unified Segmentation framework for Proofreading and Annotation in Connectomics (UniSPAC)!

          • First released:

            07 February 2025
          • Last updated:

            11 July 2025
          • Installs:

            94
          • Plugin type:

            Widget

          PartSeg

          PartSeg

          PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,

            • First released:

              14 January 2019
            • Last updated:

              10 July 2025
            • Installs:

              8.4K
            • Plugin type:

              Reader, Widget, Writer

            Label Manager

            napari-label-manager

            A plugin for management of label colormap generation and opacity control

            • JH Wang
            • First released:

              10 July 2025
            • Last updated:

              10 July 2025
            • Installs:

              17
            • Plugin type:

              Widget

            MolTrack

            napari-moltrack

            A user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.

            • Piers Turner
            • First released:

              30 May 2024
            • Last updated:

              09 July 2025
            • Installs:

              1.4K
            • Plugin type:

              Widget
            Workflow step:
            Image segmentation
            Image annotation

            napari NanoPyx

            napari-nanopyx

            napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

            • Ricardo Henriques
            • Bruno Saraiva
            • Inês Cunha
            • António Brito
            • First released:

              10 May 2023
            • Last updated:

              09 July 2025
            • Installs:

              734
            • Plugin type:

              Widget

            Napari Phasors

            napari-phasors

            A simple plugin to use phasor analysis

            • Bruno Pannunzio
            • Marcelo L. Zoccoler
            • Bruno Schuty
            • Leonel Malacrida
            • First released:

              22 November 2024
            • Last updated:

              08 July 2025
            • Installs:

              154
            • Plugin type:

              Reader, Sample data, Widget, Writer
            Workflow step:
            Image annotation
            Image segmentation

            Laber Manager

            napari-laber-manager

            A plugin for management of label colormap generation and opacity control

            • JH Wang
            • First released:

              07 July 2025
            • Last updated:

              08 July 2025
            • Installs:

              88
            • Plugin type:

              Widget

            napari 3D registration

            napari-3D-registration

            A plugin to help registering fluorescent movies in space and time

            • Leo Guignard
            • First released:

              08 July 2025
            • Last updated:

              08 July 2025
            • Installs:

              8
            • Plugin type:

              Widget

            movement

            movement

            Analysis of body movement

              • First released:

                02 April 2020
              • Last updated:

                08 July 2025
              • Installs:

                6K
              • Plugin type:

                Widget

              ndev Sampledata

              ndev-sampledata

              Sample data for the ndev kit

              • Tim Monko
              • First released:

                05 July 2025
              • Last updated:

                07 July 2025
              • Installs:

                24
              • Plugin type:

                Sample data

              3D Counter

              napari-3d-counter

              A simple plugin for counting objects in 3D images

              • Peter Newstein
              • First released:

                18 October 2023
              • Last updated:

                07 July 2025
              • Installs:

                698
              • Plugin type:

                Widget