The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 504

napari NanoPyx

napari-nanopyx

napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

  • Ricardo Henriques
  • Bruno Saraiva
  • Inês Cunha
  • António Brito
  • First released:

    10 May 2023
  • Last updated:

    23 May 2025
  • Installs:

    644
  • Plugin type:

    Widget

Bootstrapper

napari-bootstrapper

A plugin to quickly generate dense ground truth with sparse labels

  • Vijay Venu Thiyagarajan
  • First released:

    23 May 2025
  • Last updated:

    23 May 2025
  • Installs:

    0
  • Plugin type:

    Sample data, Widget
Workflow step:
Image annotation
Image segmentation

PSSR2

pssr

Point-Scanning Super-Resolution 2

  • Hayden Stites
  • First released:

    17 April 2024
  • Last updated:

    22 May 2025
  • Installs:

    488
  • Plugin type:

    Widget

Brainways

brainways

Brainways

  • Ben Kantor
  • First released:

    26 May 2023
  • Last updated:

    22 May 2025
  • Installs:

    2.6K
  • Plugin type:

    Reader, Sample data, Widget

DINOSim Segmentation

napari-dinosim

A simple plugin to use DinoSim in napari

  • Aitor Gonzalez-Marfil
  • First released:

    05 March 2025
  • Last updated:

    21 May 2025
  • Installs:

    122
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

ROXAS AI

napari-roxas-ai

A plugin that integrates the ROXAS AI analysis methods for quantitative wood anatomy in the napari platform

  • Nicola Antonio Santacroce
  • Marc Katzenmaier
  • Triyan Bhardwaj
  • Georg von Arx
  • First released:

    17 May 2025
  • Last updated:

    21 May 2025
  • Installs:

    0
  • Plugin type:

    Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation

Frontveg

frontveg

Segmentation of vegetation located to close to camera

  • Herearii Metuarea
  • First released:

    20 April 2025
  • Last updated:

    20 May 2025
  • Installs:

    10
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

Brendan Beads

brendan-beads

Calculating and visualizing distances of beads to surface

  • Anders Folkesson
  • First released:

    20 May 2025
  • Last updated:

    20 May 2025
  • Installs:

    0
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

Controls

fspi-analysis

A simple plugin to perform fspi analysis within napari

  • Olivier Cahn
  • First released:

    18 May 2025
  • Last updated:

    18 May 2025
  • Installs:

    0
  • Plugin type:

    Widget

dmc_brainmap

napari-dmc-brainmap

DMC-BrainMap is an end-to-end tool for multi-feature brain mapping across species

  • Felix Jung
  • First released:

    18 February 2025
  • Last updated:

    18 May 2025
  • Installs:

    97
  • Plugin type:

    Widget

NuclePhaser

napari-nuclephaser

A Napari plugin to detect and count nuclei on phase contrast images

  • Nikita Voloshin
  • First released:

    02 April 2025
  • Last updated:

    17 May 2025
  • Installs:

    62
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

CCI Annotator

napari-cci-annotator

Plugin to simplify annotations of datasets

  • Anders Folkesson
  • First released:

    28 April 2025
  • Last updated:

    16 May 2025
  • Installs:

    75
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

blik

blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

    • First released:

      15 June 2021
    • Last updated:

      16 May 2025
    • Installs:

      1.7K
    • Plugin type:

      Reader, Sample data, Widget, Writer

    napari-omero

    napari-omero

    napari/OMERO interoperability

    • Peter Sobolewski
    • First released:

      24 June 2020
    • Last updated:

      15 May 2025
    • Installs:

      897
    • Plugin type:

      Reader, Widget

    movement

    movement

    Analysis of body movement

      • First released:

        02 April 2020
      • Last updated:

        14 May 2025
      • Installs:

        4.9K
      • Plugin type:

        Widget