cellfinder
cellfinderAutomated 3D cell detection in large microscopy images
First released:
17 January 2020Last updated:
30 May 2025Installs:
12KPlugin type:
Sample data, Widget
Plugins
Browse plugins: 506
brainrender
brainrender-napariA napari plugin to render BrainGlobe atlases and associated data as layers.
First released:
13 October 2023Last updated:
30 May 2025Installs:
4.9KPlugin type:
Widget
brainglobe-napari-io
brainglobe-napari-ioRead and write files from the BrainGlobe computational neuroanatomy suite into napari
First released:
12 March 2021Last updated:
30 May 2025Installs:
19KPlugin type:
Reader, Writer
brainglobe-segmentation
brainglobe-segmentationSegmentation of anatomical structures in a common coordinate space
First released:
06 November 2023Last updated:
30 May 2025Installs:
6KPlugin type:
Widget
brainreg
brainregAutomated multi-atlas whole-brain microscopy registration
First released:
26 May 2020Last updated:
30 May 2025Installs:
13KPlugin type:
Sample data, Widget
BrainGlobe Registration
brainglobe-registrationA napari plugin for registration to a BrainGlobe atlas.
First released:
27 January 2025Last updated:
30 May 2025Installs:
127Plugin type:
Sample data, Widget
CCI Annotator
napari-cci-annotatorPlugin to simplify annotations of datasets
- Anders Folkesson
First released:
28 April 2025Last updated:
30 May 2025Installs:
75Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
napari-czi-reader
napari-czi-readerA Czi reader plugin for napari
- Markus L. Bille
First released:
27 May 2025Last updated:
30 May 2025Installs:
0Plugin type:
Reader
napari STRESS
napari-stressInteractive surface analysis in napari for measuring mechanical stresses in biological tissues
- Johannes Soltwedel
- Ben J. Gross
- Elijah Shelton
- Carlos Gomez
- Otger Campas
First released:
02 June 2022Last updated:
30 May 2025Installs:
1.5KPlugin type:
Sample data, Widget
allencell-segmenter-ml
allencell-segmenter-mlA plugin to leverage ML segmentation in napari
First released:
20 September 2024Last updated:
29 May 2025Installs:
487Plugin type:
Widget
movement
movementAnalysis of body movement
First released:
02 April 2020Last updated:
29 May 2025Installs:
4.9KPlugin type:
Widget
harpy
harpy-analysissingle-cell spatial proteomics analysis that makes you happy
- dambi
First released:
09 December 2024Last updated:
29 May 2025Installs:
75Plugin type:
Widget
T-MIDAS
napari-tmidasA plugin for batch processing of confocal and whole-slide microscopy images of biological tissues
- Marco Meer
First released:
05 March 2025Last updated:
28 May 2025Installs:
132Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
Image annotation
napari NanoPyx
napari-nanopyxnapari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
- Ricardo Henriques
- Bruno Saraiva
- Inês Cunha
- António Brito
First released:
10 May 2023Last updated:
28 May 2025Installs:
644Plugin type:
Widget
SEU-3D Viewer
seu-3d3d spatial visualization napari plugin
First released:
26 May 2025Last updated:
28 May 2025Installs:
0Plugin type:
Widget