Plugins

Browse plugins: 402

napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    16 January 2021
  • Last updated:

    02 March 2024
  • Installs:

    4.9K
  • Plugin type:

    information not submitted

empanada-napari

empanada-napari

Napari plugin of algorithms for Panoptic Segmentation of organelles in EM

  • Madeline Barry
  • Abhishek Bhardwaj
  • Ryan Conrad
  • First released:

    04 March 2022
  • Last updated:

    01 March 2024
  • Installs:

    1.6K
  • Plugin type:

    Widget

domb-napari

domb-napari

napari plugin for analyzing fluorescence-labeled proteins redistribution

  • Borys Olifirov
  • First released:

    22 November 2023
  • Last updated:

    01 March 2024
  • Installs:

    158
  • Plugin type:

    Widget

Napari PixSeq

napari-PixSeq

A Napari plugin for extracting time series traces from Single Molecule Localisation Microsocpy (SMLM) data.

  • Piers Turner
  • First released:

    29 February 2024
  • Last updated:

    29 February 2024
  • Installs:

    0
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

napari ConvPaint

napari-convpaint

A plugin for segmentation by pixel classification using convolutional feature extraction

  • Guillaume Witz
  • First released:

    01 November 2023
  • Last updated:

    28 February 2024
  • Installs:

    651
  • Plugin type:

    Sample data, Widget

napari-bil-data-viewer

napari-bil-data-viewer

Napari plugin for viewing Brain Image Library datasets

  • Alan M Watson
  • First released:

    24 January 2022
  • Last updated:

    28 February 2024
  • Installs:

    428
  • Plugin type:

    Reader, Widget

Brainways

napari-brainways

Brainways UI

  • Ben Kantor
  • First released:

    26 May 2023
  • Last updated:

    28 February 2024
  • Installs:

    1.1K
  • Plugin type:

    Reader, Sample data, Widget

brainrender

brainrender-napari

A napari plugin to render BrainGlobe atlases and associated data as layers.

  • Alessandro Felder
  • BrainGlobe Developers
  • First released:

    13 October 2023
  • Last updated:

    27 February 2024
  • Installs:

    813
  • Plugin type:

    Widget

acquifer-napari

acquifer-napari

Loader plugin for napari, to load Acquifer Imaging Machine datasets in napari, using dask for efficient lazy data-loading.

  • Laurent Thomas
  • First released:

    07 July 2023
  • Last updated:

    27 February 2024
  • Installs:

    245
  • Plugin type:

    Reader

brainglobe-napari-io

brainglobe-napari-io

Read and write files from the BrainGlobe computational neuroanatomy suite into napari

  • BrainGlobe Developers
  • Adam Tyson
  • First released:

    12 March 2021
  • Last updated:

    27 February 2024
  • Installs:

    10K
  • Plugin type:

    Reader, Writer

brainreg

brainreg

Automated multi-atlas whole-brain microscopy registration

  • Adam Tyson
  • Charly Rousseau
  • Stephen Lenzi
  • BrainGlobe Developers
  • First released:

    26 May 2020
  • Last updated:

    27 February 2024
  • Installs:

    7.2K
  • Plugin type:

    Sample data, Widget

brainglobe-segmentation

brainglobe-segmentation

Segmentation of anatomical structures in a common coordinate space

  • Adam Tyson
  • Horst Obenhaus
  • BrainGlobe Developers
  • First released:

    06 November 2023
  • Last updated:

    27 February 2024
  • Installs:

    1.1K
  • Plugin type:

    Widget

cellfinder

cellfinder

Automated 3D cell detection in large microscopy images

  • Adam Tyson
  • Christian Niedworok
  • Charly Rousseau
  • BrainGlobe Developers
  • First released:

    17 January 2020
  • Last updated:

    27 February 2024
  • Installs:

    6K
  • Plugin type:

    Sample data, Widget

vollseg-napari-trackmate

vollseg-napari-trackmate

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    31 December 2022
  • Last updated:

    26 February 2024
  • Installs:

    1.2K
  • Plugin type:

    Sample data, Widget

napari-roi-manager

napari-roi-manager

A ROI Manager Widget with an UI similar to ImageJ

    • First released:

      25 February 2024
    • Last updated:

      25 February 2024
    • Installs:

      26
    • Plugin type:

      information not submitted

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