ROI Manager
napari-roi-managerA ROI Manager Widget with an UI similar to ImageJ
First released:
25 February 2024Last updated:
12 February 2025Installs:
183Plugin type:
Widget
Workflow step:
Image annotation
Plugins
Browse plugins: 478
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analyses, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
12 February 2025Installs:
0Plugin type:
Reader, Widget
Napari-EpySeg
napari-epysegNapari plugin to segment epithelia with EpySeg
- Gaëlle Letort
First released:
12 February 2025Last updated:
12 February 2025Installs:
0Plugin type:
Widget
Workflow step:
Image segmentation
NaPaM
napamA plugin that allows you to run macros (i.e. python scripts) on the images for any kind of image processing.
- Jaison John
First released:
26 April 2024Last updated:
10 February 2025Installs:
207Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
WSI Reader
napari-wsiA plugin to read whole-slide images within napari.
First released:
01 February 2023Last updated:
10 February 2025Installs:
534Plugin type:
Reader, Widget
napari-UniSPAC
napari-UniSPACA Unified Segmentation framework for Proofreading and Annotation in Connectomics (UniSPAC)!
First released:
07 February 2025Last updated:
09 February 2025Installs:
70Plugin type:
Widget
napari Sediment
napari-sedimentA plugin to process hyperspectral images of sediments
- Guillaume Witz
First released:
23 September 2024Last updated:
08 February 2025Installs:
197Plugin type:
Reader, Widget
nDev
napari-ndevnapari widgets to (batch) process images from start to finish.
First released:
31 January 2023Last updated:
07 February 2025Installs:
1KPlugin type:
Reader, Widget
SegSelect
napari-segselectSelect a connected component from a membrain-seg segmentation.
- Benedikt Wimmer
First released:
31 January 2025Last updated:
06 February 2025Installs:
34Plugin type:
Reader, Widget, Writer
Workflow step:
Image annotation
Filter labels by properties
napari-filter-labels-by-propA simple plugin to filter labels by properites.
- Loïc Sauteur
First released:
24 January 2025Last updated:
06 February 2025Installs:
45Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Napari Brainbow Diagnose
napari-brainbow-diagnoseVisualize and Diagnose brainbow dataset in color space.
- Clement Caporal
First released:
25 January 2023Last updated:
04 February 2025Installs:
220Plugin type:
Sample data, Widget
ads_napari
ads-napariAxon/Myelin segmentation using AI
- NeuroPoly Lab
First released:
03 February 2025Last updated:
04 February 2025Installs:
76Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
single-cell segmentation
napari-biopbPerforming single-cell segmentation by visiting biopb endpoints
- Ji Yu
First released:
02 February 2025Last updated:
02 February 2025Installs:
11Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
MMV-playground
MMV-playgroundNapari plugin for 2D microscopy segmentation
- Peter Lampen
First released:
30 January 2025Last updated:
31 January 2025Installs:
28Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Lattice Lightsheet Analysis
napari-latticeNapari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.
- Pradeep Rajasekhar
- Lachlan Whitehead
- Robert Haase
- Michael Milton
First released:
19 July 2022Last updated:
31 January 2025Installs:
566Plugin type:
Reader, Widget