brainglobe-napari-io
brainglobe-napari-ioRead and write files from the BrainGlobe computational neuroanatomy suite into napari
First released:
12 March 2021Last updated:
01 May 2025Installs:
19KPlugin type:
Reader, Writer
Plugins
Browse plugins: 501
brainrender
brainrender-napariA napari plugin to render BrainGlobe atlases and associated data as layers.
First released:
13 October 2023Last updated:
01 May 2025Installs:
4.8KPlugin type:
Widget
brainglobe-segmentation
brainglobe-segmentationSegmentation of anatomical structures in a common coordinate space
First released:
06 November 2023Last updated:
01 May 2025Installs:
5.9KPlugin type:
Widget
brainreg
brainregAutomated multi-atlas whole-brain microscopy registration
First released:
26 May 2020Last updated:
01 May 2025Installs:
13KPlugin type:
Sample data, Widget
napari OME-Zarr Navigator
napari-ome-zarr-navigatorA plugin to browse OME-Zarr plates by conditions and load images, labels and features from ROIs
- Fabio Steffen
- Joel Luethi
First released:
19 July 2024Last updated:
01 May 2025Installs:
327Plugin type:
Sample data, Widget
Workflow step:
Visualization
BrainGlobe Registration
brainglobe-registrationA napari plugin for registration to a BrainGlobe atlas.
First released:
27 January 2025Last updated:
01 May 2025Installs:
104Plugin type:
Sample data, Widget
nnInteractive
napari-nninteractivennInteractive plugin for Napari
- Lars Krämer
- Fabian Isensee
- Maximilian Rokuss
First released:
11 March 2025Last updated:
30 April 2025Installs:
648Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Segment Anything V2
napari-SAMV2Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.
- Krishnan Venkataraman
First released:
08 October 2024Last updated:
29 April 2025Installs:
567Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Timelapse Processor
napari-timelapse-processormeta plugin to ease processing timelapse image data
- Johannes Soltwedel
First released:
15 July 2024Last updated:
29 April 2025Installs:
1.5KPlugin type:
information not submitted
Workflow step:
Image annotation
Image segmentation
napari skimage
napari-skimageA plugin to apply scikit-image operations
- Guillaume Witz
First released:
29 May 2024Last updated:
29 April 2025Installs:
956Plugin type:
Widget
Workflow step:
Image segmentation
empanada-napari
empanada-napariNapari plugin of algorithms for Panoptic Segmentation of organelles in EM
- Madeline Barry
- Abhishek Bhardwaj
- Ryan Conrad
First released:
04 March 2022Last updated:
28 April 2025Installs:
4.1KPlugin type:
Widget
CCI Annotator
napari-cci-annotatorPlugin to simplify annotations of datasets
- Anders Folkesson
First released:
28 April 2025Last updated:
28 April 2025Installs:
50Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Brainways
brainwaysBrainways
- Ben Kantor
First released:
26 May 2023Last updated:
27 April 2025Installs:
2.6KPlugin type:
Reader, Sample data, Widget
Feature Forest
featureforestA napari plugin for segmentation using vision transformer features
First released:
10 October 2024Last updated:
25 April 2025Installs:
162Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
vollseg-napari-trackmate
vollseg-napari-trackmateTrack analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
31 December 2022Last updated:
25 April 2025Installs:
1.6KPlugin type:
Sample data, Widget