Plugins

Browse plugins: 438

vollseg-napari-trackmate

vollseg-napari-trackmate

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    31 December 2022
  • Last updated:

    20 July 2024
  • Installs:

    1.3K
  • Plugin type:

    Sample data, Widget

napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    16 January 2021
  • Last updated:

    20 July 2024
  • Installs:

    5.5K
  • Plugin type:

    information not submitted

napari OME-Zarr Navigator

napari-ome-zarr-navigator

A plugin to browse OME-Zarr plates by conditions and load images, labels and features from ROIs

  • Fabio Steffen
  • Joel Luethi
  • First released:

    19 July 2024
  • Last updated:

    19 July 2024
  • Installs:

    10
  • Plugin type:

    Sample data, Widget
Workflow step:
Visualization

napari feature classifier

napari-feature-classifier

An interactive classifier plugin to use with label images and feature measurements

  • Joel Luethi
  • Maks Hess
  • First released:

    12 February 2022
  • Last updated:

    19 July 2024
  • Installs:

    626
  • Plugin type:

    Widget

anchor_droplet_chip

anchor-droplet-chip

Segment organoids and measure intensities

  • Andrey Aristov
  • First released:

    13 March 2023
  • Last updated:

    19 July 2024
  • Installs:

    476
  • Plugin type:

    Reader, Sample data, Widget

cellfinder

cellfinder

Automated 3D cell detection in large microscopy images

  • Adam Tyson
  • Christian Niedworok
  • Charly Rousseau
  • BrainGlobe Developers
  • First released:

    17 January 2020
  • Last updated:

    19 July 2024
  • Installs:

    7.7K
  • Plugin type:

    Sample data, Widget

napari vedo bridge

napari-vedo-bridge

Transfer mesh data between napari and vedo for interactive processing

  • Johannes Soltwedel
  • Marco Musy
  • First released:

    03 July 2023
  • Last updated:

    19 July 2024
  • Installs:

    108
  • Plugin type:

    Reader, Widget, Writer

napari-moltrack

napari-moltrack

Single molecule tracking package for Napari

  • Piers Turner
  • First released:

    30 May 2024
  • Last updated:

    18 July 2024
  • Installs:

    459
  • Plugin type:

    information not submitted

microscope-napari

microscope-napari

Nanobiosensorics microscopic napari plugin.

  • Nanobiosensorics
  • First released:

    21 June 2024
  • Last updated:

    18 July 2024
  • Installs:

    83
  • Plugin type:

    Sample data, Widget

napari-stress

napari-stress

Interactive surface analysis in napari for measuring mechanical stresses in biological tissues

  • Johannes Soltwedel
  • Ben J. Gross
  • Elijah Shelton
  • Carlos Gomez
  • Otger Campas
  • First released:

    02 June 2022
  • Last updated:

    17 July 2024
  • Installs:

    912
  • Plugin type:

    information not submitted

3D Counter

napari-3d-counter

A simple plugin for counting objects in 3D images

  • Peter Newstein
  • First released:

    18 October 2023
  • Last updated:

    17 July 2024
  • Installs:

    363
  • Plugin type:

    Widget

NaPaM

napam

A plugin that allows you to run macros (i.e. python scripts) on the images for any kind of image processing.

  • Jaison John
  • First released:

    26 April 2024
  • Last updated:

    16 July 2024
  • Installs:

    57
  • Plugin type:

    Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
Image annotation

TraceAnalyser

TraceAnalyser

Time Series Analysis Software

  • Piers Turner
  • First released:

    08 July 2024
  • Last updated:

    16 July 2024
  • Installs:

    37
  • Plugin type:

    information not submitted

Timelapse Processor

napari-timelapse-processor

meta plugin to ease processing timelapse image data

  • Johannes Soltwedel
  • First released:

    15 July 2024
  • Last updated:

    15 July 2024
  • Installs:

    272
  • Plugin type:

    information not submitted
Workflow step:
Image segmentation
Image annotation

blik

blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

  • Lorenzo Gaifas
  • First released:

    15 June 2021
  • Last updated:

    15 July 2024
  • Installs:

    987
  • Plugin type:

    Reader, Sample data, Widget, Writer