napari spatialdata
Interactive visualization of spatial omics data with napari
This repository contains a napari plugin for interactively exploring and annotating SpatialData objects. napari-spatialdata
is part of the SpatialData
ecosystem. To learn more about SpatialData, please see the documentation.
Installation¶
You can install napari-spatialdata
via pip:
pip install napari-spatialdata
Development Version¶
You can install napari-spatialdata
from Github with:
pip install git+https://github.com/scverse/napari-spatialdata
Or, you can also install in editable mode after cloning the repo by:
git clone https://github.com/scverse/napari-spatialdata
cd napari-spatialdata
pip install -e .
Getting started¶
To learn how to use the napari-spatialdata
plugin, please see the documentation. To learn how to integrate napari-spatialdata into your analysis workflows, please see the SpatialData tutorials. In particular:
Contributing¶
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License¶
Distributed under the terms of the BSD-3 license, "napari-spatialdata" is free and open source software
Issues¶
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.2.6
Last updated:
- 13 July 2023
First released:
- 06 July 2022
License:
- BSD-3-Clause
GitHub activity:
- Stars: 21
- Forks: 7
- Issues + PRs: 28