napari spatialdata

This repository contains a napari plugin for interactively exploring and annotating SpatialData objects. napari-spatialdata is part of the SpatialData ecosystem. To learn more about SpatialData, please see the documentation.

Installation¶

You can install napari-spatialdata via pip:

pip install napari-spatialdata

Development Version¶

You can install napari-spatialdata from Github with:

pip install git+https://github.com/scverse/napari-spatialdata

Or, you can also install in editable mode after cloning the repo by:

git clone https://github.com/scverse/napari-spatialdata
cd napari-spatialdata
pip install -e .

Getting started¶

To learn how to use the napari-spatialdata plugin, please see the documentation. To learn how to integrate napari-spatialdata into your analysis workflows, please see the SpatialData tutorials. In particular:

• Annotating regions of interest with napari
• Use landmark annotations to align multiple -omics layers

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License¶

Distributed under the terms of the BSD-3 license, "napari-spatialdata" is free and open source software

Issues¶

If you encounter any problems, please file an issue along with a detailed description.