a napari plug-in for biochemical annotation of mass spectrometry imaging data
A segmentation plugin to adapt Omnipose implementation to partial labelling.
This napari plugin creates several regions of interest of similar area over cells in a fluorescence video (2D+time). It then gets ROIs means over time and performs signal denoising: fixes photobleaching and separates signal from noise by means of blind source separation (with or without wavelet filtering).
Marcelo Leomil Zoccoler
napari plugin for tracking platelets with trackpy
Abigail S McGovern
napari plugin for annotating tracks to estimate error rates
napari plugin for iteratively improving unet-watershed segmentation
Abigail S McGovern, Juan Nunez-Iglesias
List, preview, and open data from the CZII CryoET Data Portal
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.