The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 508

seu-3d

seu-3d

3d spatial visualization napari plugin

    • First released:

      26 May 2025
    • Last updated:

      22 June 2025
    • Installs:

      0
    • Plugin type:

      Widget

    Feature Forest

    featureforest

    A napari plugin for segmentation using vision transformer features

      • First released:

        10 October 2024
      • Last updated:

        22 June 2025
      • Installs:

        177
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      napari NanoPyx

      napari-nanopyx

      napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

      • Ricardo Henriques
      • Bruno Saraiva
      • Inês Cunha
      • António Brito
      • First released:

        10 May 2023
      • Last updated:

        21 June 2025
      • Installs:

        644
      • Plugin type:

        Widget

      TARDIS-em napari plugin

      napari-tardis-em

      Tomogram and micrograph segmentation with TARDIS-em

      • Robert Kiewisz
      • First released:

        22 July 2024
      • Last updated:

        20 June 2025
      • Installs:

        292
      • Plugin type:

        Reader, Widget

      Annotation Toolbox

      napari-nD-annotator

      A toolbox for annotating objects one by one in nD

      • David Bauer
      • Jozsef Molnar
      • Dominik Hirling
      • First released:

        01 June 2022
      • Last updated:

        20 June 2025
      • Installs:

        2.9K
      • Plugin type:

        Widget

      ROXAS AI

      napari-roxas-ai

      A plugin that integrates the ROXAS AI analysis methods for quantitative wood anatomy in the napari platform

      • Nicola Antonio Santacroce
      • Marc Katzenmaier
      • Triyan Bhardwaj
      • Georg von Arx
      • First released:

        17 May 2025
      • Last updated:

        19 June 2025
      • Installs:

        0
      • Plugin type:

        Reader, Sample data, Widget, Writer
      Workflow step:
      Image annotation
      Image segmentation

      napari clusters plotter

      napari-clusters-plotter

      A plugin to use with napari for clustering objects according to their properties

      • Laura Zigutyte
      • Ryan Savill
      • Marcelo Zoccoler
      • Thorsten Wagner
      • Robert Haase
      • First released:

        15 November 2021
      • Last updated:

        17 June 2025
      • Installs:

        8.6K
      • Plugin type:

        Sample data, Widget

      PSF Generator

      napari-psfgenerator

      Plugin to compute the focal electric field

        • First released:

          05 February 2025
        • Last updated:

          17 June 2025
        • Installs:

          43
        • Plugin type:

          Reader, Sample data, Widget, Writer

        sc3D Viewer

        napari-sc3D-viewer

        A plugin to visualize 3D single cell omics

        • Leo Guignard
        • First released:

          21 June 2022
        • Last updated:

          17 June 2025
        • Installs:

          402
        • Plugin type:

          Widget

        Hyperspectral Imaging Analysis Plugin

        napari-hsi-analysis

        Napari plugin to perform analysis on Hyperspectral Imaging datasets.

        • Alessia Di Benedetto
        • First released:

          12 March 2025
        • Last updated:

          17 June 2025
        • Installs:

          82
        • Plugin type:

          Widget
        Workflow step:
        Image annotation
        Image segmentation

        Data Inspection

        napari-data-inspection

        Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.

        • Lars Krämer
        • First released:

          16 June 2025
        • Last updated:

          16 June 2025
        • Installs:

          0
        • Plugin type:

          Widget

        Timelapse Processor

        napari-timelapse-processor

        meta plugin to ease processing timelapse image data

        • Johannes Soltwedel
        • First released:

          15 July 2024
        • Last updated:

          16 June 2025
        • Installs:

          1.5K
        • Plugin type:

          information not submitted
        Workflow step:
        Image annotation
        Image segmentation

        napari-spotiflow

        napari-spotiflow

        Napari plugin for Spotiflow

          • First released:

            02 February 2024
          • Last updated:

            16 June 2025
          • Installs:

            524
          • Plugin type:

            Reader, Sample data, Widget

          CCI Annotator

          napari-cci-annotator

          Plugin to simplify annotations of datasets

          • Anders Folkesson
          • First released:

            28 April 2025
          • Last updated:

            16 June 2025
          • Installs:

            75
          • Plugin type:

            Widget
          Workflow step:
          Image segmentation
          Image annotation

          arcosPx

          arcosPx-napari

          A plugin to track spatio-temporal correlations in images

          • Benjamin Grädel
          • First released:

            27 March 2025
          • Last updated:

            14 June 2025
          • Installs:

            34
          • Plugin type:

            Widget
          Workflow step:
          Image segmentation