The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 508

napari NanoPyx

napari-nanopyx

napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

  • Ricardo Henriques
  • Bruno Saraiva
  • Inês Cunha
  • António Brito
  • First released:

    10 May 2023
  • Last updated:

    21 June 2025
  • Installs:

    644
  • Plugin type:

    Widget

seu-3d

seu-3d

3d spatial visualization napari plugin

    • First released:

      26 May 2025
    • Last updated:

      21 June 2025
    • Installs:

      0
    • Plugin type:

      Widget

    TARDIS-em napari plugin

    napari-tardis-em

    Tomogram and micrograph segmentation with TARDIS-em

    • Robert Kiewisz
    • First released:

      22 July 2024
    • Last updated:

      20 June 2025
    • Installs:

      292
    • Plugin type:

      Reader, Widget

    Annotation Toolbox

    napari-nD-annotator

    A toolbox for annotating objects one by one in nD

    • David Bauer
    • Jozsef Molnar
    • Dominik Hirling
    • First released:

      01 June 2022
    • Last updated:

      20 June 2025
    • Installs:

      2.9K
    • Plugin type:

      Widget

    ROXAS AI

    napari-roxas-ai

    A plugin that integrates the ROXAS AI analysis methods for quantitative wood anatomy in the napari platform

    • Nicola Antonio Santacroce
    • Marc Katzenmaier
    • Triyan Bhardwaj
    • Georg von Arx
    • First released:

      17 May 2025
    • Last updated:

      19 June 2025
    • Installs:

      0
    • Plugin type:

      Reader, Sample data, Widget, Writer
    Workflow step:
    Image annotation
    Image segmentation

    napari clusters plotter

    napari-clusters-plotter

    A plugin to use with napari for clustering objects according to their properties

    • Laura Zigutyte
    • Ryan Savill
    • Marcelo Zoccoler
    • Thorsten Wagner
    • Robert Haase
    • First released:

      15 November 2021
    • Last updated:

      17 June 2025
    • Installs:

      8.6K
    • Plugin type:

      Sample data, Widget

    PSF Generator

    napari-psfgenerator

    Plugin to compute the focal electric field

      • First released:

        05 February 2025
      • Last updated:

        17 June 2025
      • Installs:

        43
      • Plugin type:

        Reader, Sample data, Widget, Writer

      sc3D Viewer

      napari-sc3D-viewer

      A plugin to visualize 3D single cell omics

      • Leo Guignard
      • First released:

        21 June 2022
      • Last updated:

        17 June 2025
      • Installs:

        402
      • Plugin type:

        Widget

      Hyperspectral Imaging Analysis Plugin

      napari-hsi-analysis

      Napari plugin to perform analysis on Hyperspectral Imaging datasets.

      • Alessia Di Benedetto
      • First released:

        12 March 2025
      • Last updated:

        17 June 2025
      • Installs:

        82
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation

      Data Inspection

      napari-data-inspection

      Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.

      • Lars Krämer
      • First released:

        16 June 2025
      • Last updated:

        16 June 2025
      • Installs:

        0
      • Plugin type:

        Widget

      Timelapse Processor

      napari-timelapse-processor

      meta plugin to ease processing timelapse image data

      • Johannes Soltwedel
      • First released:

        15 July 2024
      • Last updated:

        16 June 2025
      • Installs:

        1.5K
      • Plugin type:

        information not submitted
      Workflow step:
      Image annotation
      Image segmentation

      napari-spotiflow

      napari-spotiflow

      Napari plugin for Spotiflow

        • First released:

          02 February 2024
        • Last updated:

          16 June 2025
        • Installs:

          524
        • Plugin type:

          Reader, Sample data, Widget

        CCI Annotator

        napari-cci-annotator

        Plugin to simplify annotations of datasets

        • Anders Folkesson
        • First released:

          28 April 2025
        • Last updated:

          16 June 2025
        • Installs:

          75
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation

        arcosPx

        arcosPx-napari

        A plugin to track spatio-temporal correlations in images

        • Benjamin Grädel
        • First released:

          27 March 2025
        • Last updated:

          14 June 2025
        • Installs:

          34
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation

        Tapenade Processing

        napari-tapenade-processing

        A visual pipeline to process images with Tapenade in Napari

        • Jules Vanaret
        • First released:

          13 August 2024
        • Last updated:

          13 June 2025
        • Installs:

          270
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation