The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 464

napari-tardis-em

napari-tardis-em

Tomogram and micrograph segmentation with TARDIS-em

  • Robert Kiewisz
  • First released:

    22 July 2024
  • Last updated:

    07 November 2024
  • Installs:

    117
  • Plugin type:

    information not submitted

napari-console

napari-console

A plugin that adds a console to napari

    • First released:

      21 January 2021
    • Last updated:

      06 November 2024
    • Installs:

      933K
    • Plugin type:

      information not submitted

    allencell-segmenter-ml

    allencell-segmenter-ml

    A plugin to leverage ML segmentation in napari

      • First released:

        20 September 2024
      • Last updated:

        06 November 2024
      • Installs:

        116
      • Plugin type:

        Widget

      PSSR2

      pssr

      Point-Scanning Super-Resolution 2

      • Hayden Stites
      • First released:

        17 April 2024
      • Last updated:

        05 November 2024
      • Installs:

        233
      • Plugin type:

        Widget

      Motile

      motile-plugin

      Tracking with motile

        • First released:

          23 May 2024
        • Last updated:

          04 November 2024
        • Installs:

          261
        • Plugin type:

          Sample data, Widget

        napari Sediment

        napari-sediment

        A plugin to process hyperspectral images of sediments

        • Guillaume Witz
        • First released:

          23 September 2024
        • Last updated:

          02 November 2024
        • Installs:

          120
        • Plugin type:

          Reader, Widget

        Nellie

        nellie

        Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

        • Austin E. Y. T. Lefebvre
        • First released:

          21 March 2024
        • Last updated:

          31 October 2024
        • Installs:

          637
        • Plugin type:

          Widget

        neurofly

        neurofly

        A framework to annotate single neurons at whole-brain scale

          • First released:

            30 October 2024
          • Last updated:

            31 October 2024
          • Installs:

            30
          • Plugin type:

            information not submitted

          napari OME-Zarr Navigator

          napari-ome-zarr-navigator

          A plugin to browse OME-Zarr plates by conditions and load images, labels and features from ROIs

          • Fabio Steffen
          • Joel Luethi
          • First released:

            19 July 2024
          • Last updated:

            30 October 2024
          • Installs:

            160
          • Plugin type:

            Sample data, Widget
          Workflow step:
          Visualization

          Box Manager

          napari-boxmanager

          Particle selection tool for cryo-em

          • Markus Stabrin
          • First released:

            26 September 2022
          • Last updated:

            30 October 2024
          • Installs:

            5.2K
          • Plugin type:

            Reader, Widget, Writer

          qhyccd-capture

          qhyccd-capture

          The basic operations for QHYCCD series cameras

          • QHYCCD
          • First released:

            23 October 2024
          • Last updated:

            30 October 2024
          • Installs:

            60
          • Plugin type:

            information not submitted

          Napari Signal Selector

          napari-signal-selector

          An interactive signal selector for napari, based on matplotlib.

          • Marcelo Leomil Zoccoler
          • First released:

            17 October 2023
          • Last updated:

            29 October 2024
          • Installs:

            226
          • Plugin type:

            Sample data, Widget

          Save multidimensional file as folder of tifs

          napari-file2folder

          Save multidimensional file as folder of tifs

          • Jules Vanaret
          • First released:

            28 October 2024
          • Last updated:

            28 October 2024
          • Installs:

            8
          • Plugin type:

            Widget
          Workflow step:
          Image annotation
          Image segmentation

          Segment Anything V2

          napari-SAMV2

          Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.

          • Krishnan Venkataraman
          • First released:

            08 October 2024
          • Last updated:

            28 October 2024
          • Installs:

            84
          • Plugin type:

            Widget
          Workflow step:
          Image annotation
          Image segmentation

          Tapenade Processing

          napari-tapenade-processing

          A visual pipeline to process images with Tapenade in Napari

          • Jules Vanaret
          • Alice Gros
          • Valentin Dunsing Eichenauer
          • Agathe Rostan
          • Philippe Roudot
          • Pierre-François Lenne
          • Léo Guignard
          • Sham Tlili
          • First released:

            13 August 2024
          • Last updated:

            28 October 2024
          • Installs:

            73
          • Plugin type:

            Widget
          Workflow step:
          Image annotation
          Image segmentation