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Browse plugins: 271

VoDEx

napari-vodex

A napari plugin for VoDEx : Volumetric Data and Experiment Manager. Allows to load volumetric data based on experimental conditions.

  • Anna Nadtochiy
  • Version
    1.0.11
  • Last updated
    04 February 2023
  • Plugin type
    Widget

    napari-allencell-segmenter

    napari-allencell-segmenter

    A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science

    • Allen Institute for Cell Science
    • Version
      2.1.9
    • Last updated
      03 February 2023
    • Plugin type
      Widget
      Workflow step:
      Image Segmentation
      Visualization
      Image modality:
      Fluorescence microscopy

    napari-skimage-regionprops

    napari-skimage-regionprops

    A regionprops table widget plugin for napari

    • Robert Haase
    • Version
      0.8.1
    • Last updated
      02 February 2023
    • Plugin type
      Widget
      Workflow step:
      Object feature extraction

    morphometrics

    morphometrics

    A plugin for quantifying shape and neighborhoods from images.

    • Kevin Yamauchi
    • Version
      0.0.8
    • Last updated
      02 February 2023
    • Plugin type
      information not submitted

      vollseg-napari-trackmate

      vollseg-napari-trackmate

      Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

      • Varun kapoor
      • Version
        1.3.5
      • Last updated
        02 February 2023
      • Plugin type
        information not submitted

        napari nd2 folder viewer

        napari-nd2-folder-viewer

        Look through separate nd2 files in one viewer.

        • Niklas Netter
        • Version
          0.0.13
        • Last updated
          01 February 2023
        • Plugin type
          Widget

          smo

          smo

          Implementation of the Silver Mountain Operator (SMO) for the estimation of background distributions.

          • Mauro Silberberg
          • Hernán Edgardo Grecco
          • Version
            2.0.1
          • Last updated
            01 February 2023
          • Plugin type
            Widget

            WSI Reader

            napari-wsi

            A plugin to read whole slide images within napari.

            • Philipp Plewa
            • Version
              0.1.0
            • Last updated
              01 February 2023
            • Plugin type
              Reader, Widget

              napari SIM processor

              napari-sim-processor

              A plugin to process Structured Illumination Microscopy data with gpu acceleration

              • Andrea Bassi
              • Mark Neil
              • Version
                0.0.10
              • Last updated
                01 February 2023
              • Plugin type
                Widget
                Workflow step:
                Image reconstruction
                Image modality:
                Fluorescence microscopy

              Koopa

              koopa-viz

              Vizualization plugin for koopa image analysis

              • Bastian Eichenberger
              • Version
                0.0.3
              • Last updated
                31 January 2023
              • Plugin type
                Widget

                napari-stress

                napari-stress

                Interactive surface analysis in napari for measuring mechanical stresses in biological tissues

                • Johannes Müller
                • Ben J. Gross
                • Robert Haase
                • Elijah Shelton
                • Carlos Gomez
                • Otger Campas
                • Version
                  0.1.5
                • Last updated
                  30 January 2023
                • Plugin type
                  Sample data

                  napari n2v

                  napari-n2v

                  A self-supervised denoising algorithm now usable by all in napari.

                  • Tom Burke
                  • Joran Deschamps
                  • Version
                    0.1.0
                  • Last updated
                    30 January 2023
                  • Plugin type
                    Widget, Sample data

                    napari-accelerated-pixel-and-object-classification

                    napari-accelerated-pixel-and-object-classification

                    Pixel and label classification using OpenCL-based Random Forest Classifiers

                    • Robert Haase
                    • Version
                      0.12.3
                    • Last updated
                      28 January 2023
                    • Plugin type
                      Widget
                      Workflow step:
                      Image feature detection
                      Pixel classification
                      Object classification
                      Image annotation

                    VollSeg Napari MTrack Plugin

                    vollseg-napari-mtrack

                    Segment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch

                    • Varun Kapoor
                    • Version
                      1.3.3
                    • Last updated
                      27 January 2023
                    • Plugin type
                      Reader, Writer, Widget, Sample data

                      napari-stl-exporter

                      napari-stl-exporter

                      Exports label images to 3D-printable stl files.

                      • Johannes Müller
                      • Version
                        0.1.4
                      • Last updated
                        27 January 2023
                      • Plugin type
                        Reader, Writer, Widget, Sample data

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