CCI Annotator
napari-cci-annotatorPlugin to simplify annotations of datasets
- Anders Folkesson
First released:
28 April 2025Last updated:
16 June 2025Installs:
75Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Plugins
Browse plugins: 507
arcosPx
arcosPx-napariA plugin to track spatio-temporal correlations in images
- Benjamin Grädel
First released:
27 March 2025Last updated:
14 June 2025Installs:
34Plugin type:
Widget
Workflow step:
Image segmentation
Tapenade Processing
napari-tapenade-processingA visual pipeline to process images with Tapenade in Napari
- Jules Vanaret
First released:
13 August 2024Last updated:
13 June 2025Installs:
270Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Vessel Quality Check
VessQCNapari plugin for checking and correcting the segmentation
First released:
18 February 2025Last updated:
13 June 2025Installs:
54Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Brendan Beads
brendan-beadsCalculating and visualizing distances of beads to surface
- Anders Folkesson
First released:
20 May 2025Last updated:
13 June 2025Installs:
0Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari vedo bridge
napari-vedo-bridgeTransfer mesh data between napari and vedo for interactive processing
- Johannes Soltwedel
- Marco Musy
First released:
03 July 2023Last updated:
13 June 2025Installs:
816Plugin type:
Reader, Sample data, Widget, Writer
napari STRESS
napari-stressInteractive surface analysis in napari for measuring mechanical stresses in biological tissues
- Johannes Soltwedel
- Ben J. Gross
- Elijah Shelton
- Carlos Gomez
- Otger Campas
First released:
02 June 2022Last updated:
13 June 2025Installs:
1.5KPlugin type:
Sample data, Widget
Save multidimensional file as folder of tifs
napari-file2folderSave multidimensional file as folder of tifs
- Jules Vanaret
First released:
28 October 2024Last updated:
12 June 2025Installs:
82Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Tissue Cuboid Analysis
napari-tissue-cuboid-analysisanalysis of the shape of tissue explants in CT images
- Bastien Chesaux Dapia
First released:
11 June 2025Last updated:
11 June 2025Installs:
0Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Napari Topological Skeleton Analysis
napari-toskaExtracts and analyses topological skeletons as undirected graphs
First released:
08 July 2024Last updated:
11 June 2025Installs:
91Plugin type:
Widget
Proofread Brainbow
napari-proofread-brainbowProofreading Brainbow images with napari
- Seongbin Lim
First released:
30 August 2022Last updated:
11 June 2025Installs:
255Plugin type:
Widget
Workflow step:
Image annotation
Loading tiffs using memory map
napari-memmap-tiffWhen installed and enabled in the options, it adds an option that when enabled will make napari load tiffs via memory mapping instead of fully into RAM.
- Matthew Einhorn
First released:
10 June 2025Last updated:
11 June 2025Installs:
0Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
DINOSim Segmentation
napari-dinosimA simple plugin to use DINOSim in napari
- Aitor Gonzalez-Marfil
First released:
05 March 2025Last updated:
09 June 2025Installs:
122Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
AFMReader
napari-afmreaderNapari plugin using AFMReader to load various Atomic Force Microscopy Images.
First released:
07 June 2025Last updated:
07 June 2025Installs:
0Plugin type:
Reader
NuclePhaser
napari-nuclephaserA Napari plugin to detect and count nuclei on phase contrast images
- Nikita Voloshin
First released:
02 April 2025Last updated:
07 June 2025Installs:
62Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation