napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

License BSD-3 PyPI Python Version tests codecov

Napari Visualization tool for Trackmate > 6.0 XML files for 3D + time tracks.


This caped package was generated with Cookiecutter using @caped's cookiecutter-template template.

Installation

You can install NapaTrackMater via pip:

pip install NapaTrackMater

To install latest development version :

pip install git+https://github.com/Kapoorlabs-CAPED/NapaTrackMater.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "NapaTrackMater" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Authors

Version:

  • 4.8.8

Last updated:

  • 25 February 2024

First released:

  • 16 January 2021

License:

Supported data:

  • Information not submitted

Plugin type:

  • Information not submitted

GitHub activity:

  • Stars: 16
  • Forks: 4
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • lxml
  • vollseg
  • napari
  • natsort
  • seaborn
  • cellshape-cloud
  • cellshape-helper
  • kapoorlabs-lightning
  • lightning
  • trimesh
  • umap-learn
  • plotly
  • pymesh
  • torchsummary
  • numpy <=1.23.0

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